7exs
From Proteopedia
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==Thermomicrobium roseum sarcosine oxidase mutant - S320R== | ==Thermomicrobium roseum sarcosine oxidase mutant - S320R== | ||
- | <StructureSection load='7exs' size='340' side='right'caption='[[7exs]]' scene=''> | + | <StructureSection load='7exs' size='340' side='right'caption='[[7exs]], [[Resolution|resolution]] 1.42Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EXS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EXS FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7exs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Therp Therp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EXS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EXS FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7exs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7exs OCA], [https://pdbe.org/7exs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7exs RCSB], [https://www.ebi.ac.uk/pdbsum/7exs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7exs ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trd_1773 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=309801 THERP])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Sarcosine_oxidase Sarcosine oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.3.1 1.5.3.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7exs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7exs OCA], [https://pdbe.org/7exs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7exs RCSB], [https://www.ebi.ac.uk/pdbsum/7exs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7exs ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Thermomicrobium roseum sarcosine oxidase (TrSOX) was a N-demethylase with specific substrate chiral selectivity, outstanding thermostability and environmental resistance. To promote the expression of TrSOX in Bacillus subtilis W600, the HpaII promoter of pMA5 plasmid was replaced by constitutive or inducible promoters. Through orthogonal experiment, the expression process was optimized, B. subtilis W600 cells containing pMA5-Pxyl-trSOX plasmid were cultivated until OD600nm reached 2.0 and were then induced with 1.6% xylose at 37 degrees C for 2 h, and the native environment of T. roseum was simulated by heating at 80 degrees C, with the productivity of TrSOX increased from ~8.3 to ~66.7 mug/g wet cells; and the simulated high temperature was the key switch for the final folding. To reduce the surface hydrophobicity, a S320R mutant was built to form a hydrophilic lid around the entrance of the substrate pocket, and the yield of TrSOX (S320R) was ~163.0 mug/g wet cells, approximately 20 folds as that in the initial expression system. This mutant revealed the similar secondary structure, stability, resistance, chiral substrate selectivity and optimal reaction environment with wild type TrSOX; however, the N-demethylation activities for amino acid derivative substrates were dramatically increased, while those for hydrophobic non-amino acid compounds were repressed. | ||
+ | |||
+ | Promote the expression and corrected folding of an extremely stable N-demethylase by promoter reconstruction, native environment simulation and surface design.,Gao Q, Shao J, Tang M, Xin Y, Zhang L Int J Biol Macromol. 2021 May 1;178:434-443. doi: 10.1016/j.ijbiomac.2021.02.176., Epub 2021 Feb 27. PMID:33647338<ref>PMID:33647338</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7exs" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Gu | + | [[Category: Sarcosine oxidase]] |
- | [[Category: Guo | + | [[Category: Therp]] |
- | [[Category: Shao J]] | + | [[Category: Gu, Z H]] |
- | [[Category: Shen C]] | + | [[Category: Guo, Z T]] |
- | [[Category: Shi Y]] | + | [[Category: Shao, J]] |
- | [[Category: Tang | + | [[Category: Shen, C]] |
- | [[Category: Xin Y]] | + | [[Category: Shi, Y]] |
- | [[Category: Zhang L]] | + | [[Category: Tang, M W]] |
+ | [[Category: Xin, Y]] | ||
+ | [[Category: Zhang, L]] | ||
+ | [[Category: Chiral specificity]] | ||
+ | [[Category: Extremely stable]] | ||
+ | [[Category: N-demethylase]] | ||
+ | [[Category: Oxidoreductase]] |
Revision as of 10:57, 16 February 2022
Thermomicrobium roseum sarcosine oxidase mutant - S320R
|
Categories: Large Structures | Sarcosine oxidase | Therp | Gu, Z H | Guo, Z T | Shao, J | Shen, C | Shi, Y | Tang, M W | Xin, Y | Zhang, L | Chiral specificity | Extremely stable | N-demethylase | Oxidoreductase