7ryy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structure of the complex of LBD-TMD part of AMPA receptor GluA2 with auxiliary subunit TARP gamma-5 bound to agonist glutamate==
==Structure of the complex of LBD-TMD part of AMPA receptor GluA2 with auxiliary subunit TARP gamma-5 bound to agonist glutamate==
-
<StructureSection load='7ryy' size='340' side='right'caption='[[7ryy]]' scene=''>
+
<StructureSection load='7ryy' size='340' side='right'caption='[[7ryy]], [[Resolution|resolution]] 4.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RYY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7ryy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RYY FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ryy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ryy OCA], [https://pdbe.org/7ryy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ryy RCSB], [https://www.ebi.ac.uk/pdbsum/7ryy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ryy ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene>, <scene name='pdbligand=PCW:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PCW</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ryy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ryy OCA], [https://pdbe.org/7ryy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ryy RCSB], [https://www.ebi.ac.uk/pdbsum/7ryy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ryy ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/GRIA2_RAT GRIA2_RAT]] Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.<ref>PMID:9351977</ref> <ref>PMID:19265014</ref> <ref>PMID:21172611</ref> <ref>PMID:12501192</ref> <ref>PMID:12015593</ref> <ref>PMID:12872125</ref> <ref>PMID:12730367</ref> <ref>PMID:16192394</ref> <ref>PMID:15591246</ref> <ref>PMID:17018279</ref> <ref>PMID:16483599</ref> <ref>PMID:19946266</ref> <ref>PMID:21317873</ref> <ref>PMID:21846932</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
AMPA receptors (AMPARs) mediate the majority of excitatory neurotransmission. Their surface expression, trafficking, gating, and pharmacology are regulated by auxiliary subunits. Of the two types of TARP auxiliary subunits, type I TARPs assume activating roles, while type II TARPs serve suppressive functions. We present cryo-EM structures of GluA2 AMPAR in complex with type II TARP gamma5, which reduces steady-state currents, increases single-channel conductance, and slows recovery from desensitization. Regulation of AMPAR function depends on its ligand-binding domain (LBD) interaction with the gamma5 head domain. GluA2-gamma5 complex shows maximum stoichiometry of two TARPs per AMPAR tetramer, being different from type I TARPs but reminiscent of the auxiliary subunit GSG1L. Desensitization of both GluA2-GSG1L and GluA2-gamma5 complexes is accompanied by rupture of LBD dimer interface, while GluA2-gamma5 but not GluA2-GSG1L LBD dimers remain two-fold symmetric. Different structural architectures and desensitization mechanisms of complexes with auxiliary subunits endow AMPARs with broad functional capabilities.
 +
 +
Structure and desensitization of AMPA receptor complexes with type II TARP gamma5 and GSG1L.,Klykov O, Gangwar SP, Yelshanskaya MV, Yen L, Sobolevsky AI Mol Cell. 2021 Dec 2;81(23):4771-4783.e7. doi: 10.1016/j.molcel.2021.09.030. Epub, 2021 Oct 21. PMID:34678168<ref>PMID:34678168</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7ryy" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Gangwar SP]]
+
[[Category: Gangwar, S P]]
-
[[Category: Klykov OV]]
+
[[Category: Klykov, O V]]
-
[[Category: Sobolevsky AI]]
+
[[Category: Sobolevsky, A I]]
-
[[Category: Yelshanskaya MV]]
+
[[Category: Yelshanskaya, M V]]
 +
[[Category: Ampa receptor]]
 +
[[Category: Ion channel]]
 +
[[Category: Membrane protein]]
 +
[[Category: Neurotransmission]]
 +
[[Category: Synapse]]
 +
[[Category: Tarp gamma-5]]

Revision as of 11:09, 16 February 2022

Structure of the complex of LBD-TMD part of AMPA receptor GluA2 with auxiliary subunit TARP gamma-5 bound to agonist glutamate

PDB ID 7ryy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/7ryy"
Personal tools