2mkb

From Proteopedia

(Difference between revisions)

Revision as of 11:36, 16 February 2022

Structure of NS2(113-137) GBVB protein

Structural highlights

2mkb is a 1 chain structure. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	2lzp, 2lzq
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[POLG_GBVB] Core protein packages viral RNA to form a viral nucleocapsid, and promotes virion budding. Modulates viral translation initiation by interacting with HCV IRES and 40S ribosomal subunit. Probably also regulates many host cellular functions such as antiviral state inhibition, cell transformation and apoptosis (By similarity).^[1] Envelope glycoproteins E1 and E2 are involved in virus attachment to the host cell as well as in virus endocytosis and fusion with host membrane (By similarity).^[2] P13 may function as a multimeric ion channel protein (viroporin).^[3] Protease NS2-3 is a cysteine protease responsible for the autocatalytic cleavage of NS2-NS3 (By similarity).^[4] NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS4A, is responsible for the cleavages of NS3-NS4A, NS4A-NS4B, NS4B-NS5A and NS5A-NS5B (By similarity). NS3 RNA helicase binds to RNA and unwinds dsRNA in the 3' to 5' direction and likely RNA stable secondary structure in the template strand. Cleaves and inhibits the human antiviral protein MAVS.^[5] NS5A is a component of the replication complex involved in RNA-binding (By similarity).^[6] NS5B is an RNA-dependent RNA polymerase that plays an essential role in the virus replication (By similarity).^[7]

Publication Abstract from PubMed

GB virus B (GBV-B), which is hepatotropic in experimentally infected small New World primates, is a member of the Hepacivirus genus but phylogenetically relatively distant to hepatitis C virus (HCV). To gain insight into the role and specificity of hepaciviral nonstructural protein 2 (NS2), which is required for HCV polyprotein processing and particle morphogenesis, we investigated whether NS2 structural and functional features are conserved between HCV and GBV-B. We found that GBV-B NS2, like HCV NS2, has a cysteine protease activity responsible for cleavage at the NS2/NS3 junction and we experimentally confirmed the location of this junction within the viral polyprotein. A model for GBV-B NS2 membrane topology was experimentally established by determining the membrane association properties of NS2 segments fused to GFP and their NMR structure using synthetic peptides, as well as by applying an N-glycosylation scanning approach. Similar glycosylation studies confirmed HCV NS2 organization. Together, our data show that despite limited amino acid sequence similarity, GBV-B and HCV NS2 share a common membrane topology with 3 N-terminal transmembrane segments, that is predicted to also apply to other recently discovered hepaciviruses. Based on these data and using trans-complementation systems, we found that intra-genotypic hybrid NS2 proteins with heterologous N-terminal membrane segments were able to trans-complement efficiently an assembly-deficient HCV mutant with a point mutation in the NS2 C-terminal domain, while GBV-B/HCV or inter-genotypic NS2 chimeras were not. These studies indicate that virus- and genotype-specific intramolecular interactions between N- and C-terminal domains of NS2 are critically involved in HCV morphogenesis. IMPORTANCE: Nonstructural protein 2 (NS2) of hepatitis C virus (HCV) is a multifunctional protein critically involved in polyprotein processing and virion morphogenesis. To gain insight into NS2 mechanisms of action, we investigated whether NS2 structural and functional features are conserved between HCV and GB virus B (GBV-B), a phylogenetically relatively distant primate hepacivirus. We showed that GBV-B NS2, like HCV NS2, carries a cysteine protease activity. We experimentally established a model for GBV-B NS2 membrane topology and demonstrated that despite limited sequence similarity, GBV-B and HCV NS2 share a common organization with three N-terminal transmembrane segments. We found that the role of HCV NS2 in particle assembly is genotype-specific and relies on critical interactions between its N- and C-terminal domains. This first comparative analysis of NS2 from two hepaciviruses and our structural predictions of NS2 from other newly identified mammal hepaciviruses highlight conserved key features of the hepaciviral life cycle.

NS2 proteins of GB virus B and hepatitis C virus share common protease activities and membrane topologies.,Boukadida C, Marnata C, Montserret R, Cohen L, Blumen B, Gouttenoire J, Moradpour D, Penin F, Martin A J Virol. 2014 Apr 16. PMID:24741107^[8]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Takikawa S, Engle RE, Emerson SU, Purcell RH, St Claire M, Bukh J. Functional analyses of GB virus B p13 protein: development of a recombinant GB virus B hepatitis virus with a p7 protein. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3345-50. Epub 2006 Feb 21. PMID:16492760 doi:http://dx.doi.org/0511297103
↑ Boukadida C, Marnata C, Montserret R, Cohen L, Blumen B, Gouttenoire J, Moradpour D, Penin F, Martin A. NS2 proteins of GB virus B and hepatitis C virus share common protease activities and membrane topologies. J Virol. 2014 Apr 16. PMID:24741107 doi:http://dx.doi.org/10.1128/JVI.00656-14

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2mkb"

@@ Line 3: / Line 3: @@
 <StructureSection load='2mkb' size='340' side='right'caption='[[2mkb]], [[NMR_Ensembles_of_Models | 28 NMR models]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2mkb]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MKB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2MKB FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2mkb]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MKB FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2lzp|2lzp]], [[2lzq|2lzq]]</td></tr>
+</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2lzp|2lzp]], [[2lzq|2lzq]]</div></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2mkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mkb OCA], [http://pdbe.org/2mkb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mkb RCSB], [http://www.ebi.ac.uk/pdbsum/2mkb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mkb ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mkb OCA], [https://pdbe.org/2mkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mkb RCSB], [https://www.ebi.ac.uk/pdbsum/2mkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mkb ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/POLG_GBVB POLG_GBVB]] Core protein packages viral RNA to form a viral nucleocapsid, and promotes virion budding. Modulates viral translation initiation by interacting with HCV IRES and 40S ribosomal subunit. Probably also regulates many host cellular functions such as antiviral state inhibition, cell transformation and apoptosis (By similarity).<ref>PMID:16492760</ref>   Envelope glycoproteins E1 and E2 are involved in virus attachment to the host cell as well as in virus endocytosis and fusion with host membrane (By similarity).<ref>PMID:16492760</ref>   P13 may function as a multimeric ion channel protein (viroporin).<ref>PMID:16492760</ref>   Protease NS2-3 is a cysteine protease responsible for the autocatalytic cleavage of NS2-NS3 (By similarity).<ref>PMID:16492760</ref>   NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS4A, is responsible for the cleavages of NS3-NS4A, NS4A-NS4B, NS4B-NS5A and NS5A-NS5B (By similarity). NS3 RNA helicase binds to RNA and unwinds dsRNA in the 3' to 5' direction and likely RNA stable secondary structure in the template strand. Cleaves and inhibits the human antiviral protein MAVS.<ref>PMID:16492760</ref>   NS5A is a component of the replication complex involved in RNA-binding (By similarity).<ref>PMID:16492760</ref>   NS5B is an RNA-dependent RNA polymerase that plays an essential role in the virus replication (By similarity).<ref>PMID:16492760</ref>
+[[https://www.uniprot.org/uniprot/POLG_GBVB POLG_GBVB]] Core protein packages viral RNA to form a viral nucleocapsid, and promotes virion budding. Modulates viral translation initiation by interacting with HCV IRES and 40S ribosomal subunit. Probably also regulates many host cellular functions such as antiviral state inhibition, cell transformation and apoptosis (By similarity).<ref>PMID:16492760</ref>   Envelope glycoproteins E1 and E2 are involved in virus attachment to the host cell as well as in virus endocytosis and fusion with host membrane (By similarity).<ref>PMID:16492760</ref>   P13 may function as a multimeric ion channel protein (viroporin).<ref>PMID:16492760</ref>   Protease NS2-3 is a cysteine protease responsible for the autocatalytic cleavage of NS2-NS3 (By similarity).<ref>PMID:16492760</ref>   NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS4A, is responsible for the cleavages of NS3-NS4A, NS4A-NS4B, NS4B-NS5A and NS5A-NS5B (By similarity). NS3 RNA helicase binds to RNA and unwinds dsRNA in the 3' to 5' direction and likely RNA stable secondary structure in the template strand. Cleaves and inhibits the human antiviral protein MAVS.<ref>PMID:16492760</ref>   NS5A is a component of the replication complex involved in RNA-binding (By similarity).<ref>PMID:16492760</ref>   NS5B is an RNA-dependent RNA polymerase that plays an essential role in the virus replication (By similarity).<ref>PMID:16492760</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==

2mkb

From Proteopedia

Revision as of 11:36, 16 February 2022

Structure of NS2(113-137) GBVB protein

Structural highlights

Function

Publication Abstract from PubMed

References

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