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Ribonucleotide reductase 3D structures
From Proteopedia
(Difference between revisions)
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*'''Class Ia ribonucleotide reductase''' | *'''Class Ia ribonucleotide reductase''' | ||
| - | *Ribonucleotide reductase large subunit | + | *Ribonucleotide reductase large subunit R1 |
**[[1zyz]], [[1zzd]], [[2cvs]], [[2cvt]], [[2cvu]], [[2cvv]], [[2cvw]], [[2cvx]], [[2cvy]] - yRNR R1 – yeast<BR /> | **[[1zyz]], [[1zzd]], [[2cvs]], [[2cvt]], [[2cvu]], [[2cvv]], [[2cvw]], [[2cvx]], [[2cvy]] - yRNR R1 – yeast<BR /> | ||
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**[[2wgh]], [[5d1y]] - hRNR M1 + ATP + Mg<BR /> | **[[2wgh]], [[5d1y]] - hRNR M1 + ATP + Mg<BR /> | ||
**[[6aui]] - hRNR M1 + ATP + CDP<br /> | **[[6aui]] - hRNR M1 + ATP + CDP<br /> | ||
| - | **[[5tus]], [[4x3v]] - hRNR M1 + inhibitor + TTP<br /> | + | **[[5tus]], [[4x3v]], [[6l3r]], [[6l7l]], [[6lkm]] - hRNR M1 + inhibitor + TTP<br /> |
**[[3paw]] - yRNR R1 + ATP<BR /> | **[[3paw]] - yRNR R1 + ATP<BR /> | ||
**[[3k8t]] - yRNR R1 + ADP analog<BR /> | **[[3k8t]] - yRNR R1 + ADP analog<BR /> | ||
| Line 32: | Line 32: | ||
**[[3rsr]] – yRNR R1 + inhibitor<br /> | **[[3rsr]] – yRNR R1 + inhibitor<br /> | ||
**[[1qfn]] - EcRNR R1 + glutaredoxin 1<br /> | **[[1qfn]] - EcRNR R1 + glutaredoxin 1<br /> | ||
| + | **[[7agj]] - AaRNR R1 + ATP – "Aquifex aeolicus''<br /> | ||
| - | *RNR small subunit | + | *RNR small subunit R2 |
**[[3hf1]], [[2vux]], [[2uw2]], [[4djn]], [[3olj]] – hRNR M2<BR /> | **[[3hf1]], [[2vux]], [[2uw2]], [[4djn]], [[3olj]] – hRNR M2<BR /> | ||
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**[[2xof]], [[1av8]], [[1rib]] – EcRNR R2 + Fe2O<BR /> | **[[2xof]], [[1av8]], [[1rib]] – EcRNR R2 + Fe2O<BR /> | ||
**[[2alx]], [[1jqc]], [[1jpr]] - EcRNR R2 + Mn<br /> | **[[2alx]], [[1jqc]], [[1jpr]] - EcRNR R2 + Mn<br /> | ||
| - | **[[1piy]], [[1r65]], [[1mxr]], [[1xik]] - EcRNR R2 + Fe<br /> | + | **[[1piy]], [[1r65]], [[1mxr]], [[1xik]], [[7ai8]], [[7ai9]], [[7bet]] - EcRNR R2 + Fe<br /> |
**[[1piz]], [[1pj0]], [[1pj1]], [[1pim]], [[1piu]], [[1biq]], [[1pfr]] - EcRNR R2 (mutant) + Fe<BR /> | **[[1piz]], [[1pj0]], [[1pj1]], [[1pim]], [[1piu]], [[1biq]], [[1pfr]] - EcRNR R2 (mutant) + Fe<BR /> | ||
**[[1yfd]], [[2av8]] - EcRNR R2 (mutant) + Fe2O<br /> | **[[1yfd]], [[2av8]] - EcRNR R2 (mutant) + Fe2O<br /> | ||
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**[[5omj]], [[5omk]] - GkRNR + Fe <br /> | **[[5omj]], [[5omk]] - GkRNR + Fe <br /> | ||
**[[4hr0]], [[4hr4]] - GkRNR + Fe + Mn <br /> | **[[4hr0]], [[4hr4]] - GkRNR + Fe + Mn <br /> | ||
| - | **[[6f6c]], [[6f6e]], [[6f6f]], [[6f6g]], [[6f6h]], [[6f6k]] - GkRNR (mutant) + Fe + Mn <br /> | + | **[[6f6c]], [[6f6e]], [[6f6f]], [[6f6g]], [[6f6h]], [[6f6k]], [[6qjv]], [[6qk0]], [[6qk1]], [[6qk2]] - GkRNR (mutant) + Fe + Mn <br /> |
**[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br /> | **[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br /> | ||
| + | **[[6gp2]], [[6gp3]] - RNR R2 – ''Mesoplasma florum''<br /> | ||
| + | **[[7aik]], [[7ail]] - AaRNR R2 <br /> | ||
| + | **[[6y2n]] - RNR R2 – ''Saccharopolyspora erythraea''<br /> | ||
| + | **[[6ebz]], [[6ebz]] - AuRNR R2 – ''Aerococcus urinae''<br /> | ||
| + | **[[6qrz]] - RNR R2 – ''Sulfolobus acidocaldarius''<br /> | ||
| + | **[[6zjk]] - RNR R2 – ''Clostridium botulinum''<br /> | ||
*''Ribonucleotide reductase small subunit complex'' | *''Ribonucleotide reductase small subunit complex'' | ||
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*Ribonucleotide reductase small+large subunit | *Ribonucleotide reductase small+large subunit | ||
| + | **[[1r1r]], [[5r1r]], [[6r1r]], [[7r1r]], [[1r1r]] – EcRNR R1 (mutant) + R2<br /> | ||
**[[3uus]] - EcRNR R1+ R2 + Fe + ATP<br /> | **[[3uus]] - EcRNR R1+ R2 + Fe + ATP<br /> | ||
**[[4erm]] - EcRNR R1+ R2 + Fe2O + ATP + ADP<br /> | **[[4erm]] - EcRNR R1+ R2 + Fe2O + ATP + ADP<br /> | ||
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**[[2r1r]] - EcRNR R1 + R2 + TTP<BR /> | **[[2r1r]] - EcRNR R1 + R2 + TTP<BR /> | ||
**[[3r1r]] - EcRNR R1 + R2 + AMPPNP<BR /> | **[[3r1r]] - EcRNR R1 + R2 + AMPPNP<BR /> | ||
| + | **[[6w4x]] - EcRNR R1 + R2 + GDP + TTP – Cryo EM<br /> | ||
**[[4r1r]] - EcRNR R1 + R2 + GDP + TTP<BR /> | **[[4r1r]] - EcRNR R1 + R2 + GDP + TTP<BR /> | ||
**[[2bq1]] - StRNR R1+ R2<br /> | **[[2bq1]] - StRNR R1+ R2<br /> | ||
**[[5im3]] - RNR + dATP – ''Pseudomonas aeruginosa''<br /> | **[[5im3]] - RNR + dATP – ''Pseudomonas aeruginosa''<br /> | ||
| + | **[[7mdi]] - RNR R1 + R2 + CDP + DTP – ''Neisseria gonorrhoea'' - Cryo EM<br /> | ||
| - | *'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit | + | *'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit; NrdI |
**[[6cgm]] - BaRNR NrdE – ''Bacillus subtilis''<br /> | **[[6cgm]] - BaRNR NrdE – ''Bacillus subtilis''<br /> | ||
| + | **[[6qo5]], [[6qo7]], [[6qo8]], [[6qo9]], [[6qob]], [[6tqv]], [[6tqw]], [[6tqx]] - BaRNR NrdF <br /> | ||
| + | **[[6tqy]], [[6tqz]] - BaRNR NrdF (mutant)<br /> | ||
**[[4dr0]] - BaRNR NrdF + Mn <br /> | **[[4dr0]] - BaRNR NrdF + Mn <br /> | ||
**[[6myx]] - BaRNR NrdE + DTP – Cryo EM<br /> | **[[6myx]] - BaRNR NrdE + DTP – Cryo EM<br /> | ||
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**[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br /> | **[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br /> | ||
**[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br /> | **[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br /> | ||
| + | **[[6ebq]] - AuRNR NrdI + FMN<br /> | ||
| + | |||
| + | *Class Id RNR; NrdB – small subunit | ||
| + | |||
| + | **[[6sf4]], [[6sf5]] - RNR β subunit – ''Leeuwenhoekiella blandensis''<br /> | ||
| + | **[[6dqw]] - RNR α subunit – ''Flavobacterium johnsoniae''<br /> | ||
| + | **[[6dqx]] - RNR α subunit – ''Actinobacillus ureae''<br /> | ||
*'''Class II ribonucleotide reductase''' | *'''Class II ribonucleotide reductase''' | ||
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**[[1h7b]] – T4RNR (mutant) <br /> | **[[1h7b]] – T4RNR (mutant) <br /> | ||
**[[4u3e]] – TmRNR large subunit <br /> | **[[4u3e]] – TmRNR large subunit <br /> | ||
| + | |||
| + | *Vitamin B12-dependent RNR | ||
| + | |||
| + | **[[7b9p]], [[7b9q]] – RNR + DTP – ''Rhodobacter sphaeroides'' <br /> | ||
| + | |||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 10:57, 20 February 2022
3D Structures of Ribonucleotide reductase
Updated on 20-February-2022
