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Ribozyme
From Proteopedia
(Difference between revisions)
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== 3D Structures of Ribozymes == | == 3D Structures of Ribozymes == | ||
| + | [[Ribozyme 3D structures]] | ||
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
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**[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | **[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | ||
**[[1x8w]] – TtRZ – ''Tetrahymena thermophilia''<BR /> | **[[1x8w]] – TtRZ – ''Tetrahymena thermophilia''<BR /> | ||
| + | **[[6wls]], [[7ez0]], [[7ez2]] – TtRZ – Cryo EM<br /> | ||
**[[1grz]], [[6bjx]], [[6d8l]], [[6d8m]], [[6d8n]], [[6d8o]] – TtRZ (mutant) <BR /> | **[[1grz]], [[6bjx]], [[6d8l]], [[6d8m]], [[6d8n]], [[6d8o]] – TtRZ (mutant) <BR /> | ||
**[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | **[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | ||
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**[[1ykq]] – Diels-Alder RZ<BR /> | **[[1ykq]] – Diels-Alder RZ<BR /> | ||
**[[1ykv]], [[1yls]] - Diels-Alder RZ + reaction products<br /> | **[[1ykv]], [[1yls]] - Diels-Alder RZ + reaction products<br /> | ||
| - | **[[4qjh]], [[5dun]] – twister | + | **[[4qjh]], [[5dun]] – twister sRZ – synthetic<br /> |
| - | **[[4rge]], [[4rgf]] – twister | + | **[[4rge]], [[4rgf]] – twister sRZ env22 <br /> |
**[[5t5a]], [[5y85]], [[5y87]] – twister sister RZ – Metagenome<br /> | **[[5t5a]], [[5y85]], [[5y87]] – twister sister RZ – Metagenome<br /> | ||
| - | **[[5k7c]],[[5k7d]],[[5k7e]], [[5ktj]] - pistol RZ | + | **[[5k7c]],[[5k7d]],[[5k7e]], [[5ktj]], [[6ufj]], [[6ufk]] - pistol sRZ <br/> |
| - | **[[6gyv]] – lariat-capping RZ – ''Didymium iridis''<BR /> | + | **[[6uey]], [[6uf1]] – pistol EcRZ <br /> |
| + | **[[6r47]] – pistol RZ – Alistipes putredinis <br /> | ||
| + | **[[6g7z]], [[6gyv]] – lariat-capping RZ – ''Didymium iridis''<BR /> | ||
| + | **[[6jq5]], [[6jq6]] – hatchet sRZ <br /> | ||
| + | **[[6xjq]], [[6xjw]], [[6xjy]], [[6xjz]] – self-alkylating RZ + antibody – ''Aeropyrum pernix'' <br /> | ||
| + | **[[7dlz]], [[7dwh]] – SAM-dependent methyltransferase sRZ + U1A <br /> | ||
| + | **[[6wll]], [[6wlm]] – Gly RZ – ''Fusobacterium nucleatum'' <br /> | ||
| + | **[[6wlt]], [[6wlu]] – Gly RZ – ''Vibrio cholerae'' <br /> | ||
}} | }} | ||
Revision as of 10:07, 3 March 2022
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3D Structures of Ribozymes
Updated on 03-March-2022
References
- ↑ Tang J, Breaker RR. Rational design of allosteric ribozymes. Chem Biol. 1997 Jun;4(6):453-9. PMID:9224568
- ↑ Amarzguioui M, Prydz H. Hammerhead ribozyme design and application. Cell Mol Life Sci. 1998 Nov;54(11):1175-202. PMID:9849614 doi:http://dx.doi.org/10.1007/s000180050247
- ↑ Cech TR. Self-splicing of group I introns. Annu Rev Biochem. 1990;59:543-68. PMID:2197983 doi:http://dx.doi.org/10.1146/annurev.bi.59.070190.002551
- ↑ Roth A, Weinberg Z, Chen AG, Kim PB, Ames TD, Breaker RR. A widespread self-cleaving ribozyme class is revealed by bioinformatics. Nat Chem Biol. 2014 Jan;10(1):56-60. doi: 10.1038/nchembio.1386. Epub 2013 Nov, 17. PMID:24240507 doi:http://dx.doi.org/10.1038/nchembio.1386
- ↑ Weinberg Z, Kim PB, Chen TH, Li S, Harris KA, Lunse CE, Breaker RR. New classes of self-cleaving ribozymes revealed by comparative genomics analysis. Nat Chem Biol. 2015 Aug;11(8):606-10. doi: 10.1038/nchembio.1846. Epub 2015 Jul, 13. PMID:26167874 doi:http://dx.doi.org/10.1038/nchembio.1846
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