This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3g4q
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and chloroform bound to the XE4 cavity== | ==Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and chloroform bound to the XE4 cavity== | ||
| - | <StructureSection load='3g4q' size='340' side='right' caption='[[3g4q]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='3g4q' size='340' side='right'caption='[[3g4q]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3g4q]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3g4q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anain Anain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G4Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G4Q FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MCH:TRICHLOROMETHANE'>MCH</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MCH:TRICHLOROMETHANE'>MCH</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3sdh|3sdh]], [[4sdh|4sdh]], [[3g46|3g46]], [[3g4r|3g4r]], [[3g4u|3g4u]], [[3g4v|3g4v]], [[3g4w|3g4w]], [[3g4y|3g4y]], [[3g52|3g52]], [[3g53|3g53]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3sdh|3sdh]], [[4sdh|4sdh]], [[3g46|3g46]], [[3g4r|3g4r]], [[3g4u|3g4u]], [[3g4v|3g4v]], [[3g4w|3g4w]], [[3g4y|3g4y]], [[3g52|3g52]], [[3g53|3g53]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HBI ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HBI ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g4q OCA], [https://pdbe.org/3g4q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g4q RCSB], [https://www.ebi.ac.uk/pdbsum/3g4q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g4q ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 36: | Line 36: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Anain]] | [[Category: Anain]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Cohen, J]] | [[Category: Cohen, J]] | ||
[[Category: Gibson, Q H]] | [[Category: Gibson, Q H]] | ||
Revision as of 07:55, 9 March 2022
Ligand migration and cavities within scapharca dimeric hemoglobin: wild type with co bound to heme and chloroform bound to the XE4 cavity
| |||||||||||
Categories: Anain | Large Structures | Cohen, J | Gibson, Q H | Knapp, J E | Nichols, J C | Pahl, R | Royer, W E | Schulten, K | Srajer, V | Allostery | Cytoplasm | Heme | Iron | Metal-binding | Oxygen affinity | Oxygen binding | Oxygen storage/transport | Oxygen transport | Transport

