This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gqa

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in complex with cobalt ions==
==Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in complex with cobalt ions==
-
<StructureSection load='3gqa' size='340' side='right' caption='[[3gqa]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3gqa' size='340' side='right'caption='[[3gqa]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gqa]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gqa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GQA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gq7|3gq7]], [[3gq8|3gq8]], [[3gq9|3gq9]], [[3gqh|3gqh]], [[3gqk|3gqk]], [[3gqn|3gqn]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3gq7|3gq7]], [[3gq8|3gq8]], [[3gq9|3gq9]], [[3gqh|3gqh]], [[3gqk|3gqk]], [[3gqn|3gqn]]</div></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">12, gene product 12 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">12, gene product 12 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqa OCA], [http://pdbe.org/3gqa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gqa RCSB], [http://www.ebi.ac.uk/pdbsum/3gqa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqa ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqa OCA], [https://pdbe.org/3gqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gqa RCSB], [https://www.ebi.ac.uk/pdbsum/3gqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqa ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 13: Line 13:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/3gqa_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/3gqa_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 33: Line 33:
</StructureSection>
</StructureSection>
[[Category: Bpph2]]
[[Category: Bpph2]]
 +
[[Category: Large Structures]]
[[Category: Rossmann, M G]]
[[Category: Rossmann, M G]]
[[Category: Xiang, Y]]
[[Category: Xiang, Y]]
[[Category: Beta helix]]
[[Category: Beta helix]]
[[Category: Viral protein]]
[[Category: Viral protein]]

Revision as of 07:52, 16 March 2022

Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in complex with cobalt ions

PDB ID 3gqa

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools