7dru

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==Crystal Structure of the Dog Lipocalin Allergen Can f 1==
==Crystal Structure of the Dog Lipocalin Allergen Can f 1==
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<StructureSection load='7dru' size='340' side='right'caption='[[7dru]]' scene=''>
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<StructureSection load='7dru' size='340' side='right'caption='[[7dru]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DRU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DRU FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7dru]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DRU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DRU FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dru FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dru OCA], [https://pdbe.org/7dru PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dru RCSB], [https://www.ebi.ac.uk/pdbsum/7dru PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dru ProSAT]</span></td></tr>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dru FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dru OCA], [https://pdbe.org/7dru PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dru RCSB], [https://www.ebi.ac.uk/pdbsum/7dru PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dru ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Allergy to dogs has become increasingly prominent worldwide. Seven dog allergens have been identified, including Canis familiaris allergen 1-7 (Can f 1-7). Although Can f 1 is a major dog allergen sensitized to 50-75% of dog-allergic subjects, its IgE epitopes have not been identified. The structural analysis of an allergen is important to identify conformational epitopes. In this study, we generated a recombinant Can f 1 protein and determined its crystal structure using X-ray crystallography. Can f 1 had a typical lipocalin fold, which is composed of an eight-stranded beta-barrel and alpha-helix, and has high similarity to Can f 2, Can f 4, and Can f 6 in overall structure. However, the localizations of surface charges on these proteins were quite different. Based on sequence alignment and tertiary structure, we predicted five critical residues (His86, Glu98, Arg111, Glu138, and Arg152) for the IgE epitopes. The relevance of these residues to IgE reactivity was assessed by generating Can f 1 mutants with these residues substituted for alanine. Although the effects of the mutation on IgE binding depended on the sera of dog-allergic patients, H86A and R152A mutants showed reduced IgE reactivity compared with wild-type Can f 1. These results suggest that Can f 1 residues His86 and Arg152 are candidates for the IgE conformational epitope.
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Structure-based prediction of the IgE epitopes of the major dog allergen Can f 1.,Nakatsuji M, Sugiura K, Suda K, Sakurai M, Ubatani M, Muroya H, Okubo R, Noguchi R, Kamata Y, Fukutomi Y, Ishibashi O, Nishimura S, Inui T FEBS J. 2021 Oct 26. doi: 10.1111/febs.16252. PMID:34699686<ref>PMID:34699686</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7dru" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Inui T]]
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[[Category: Inui, T]]
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[[Category: Muroya H]]
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[[Category: Muroya, H]]
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[[Category: Nishimura S]]
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[[Category: Nishimura, S]]
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[[Category: Suda K]]
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[[Category: Suda, K]]
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[[Category: Allergen]]
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[[Category: Lipocalin allergen]]

Revision as of 11:11, 30 March 2022

Crystal Structure of the Dog Lipocalin Allergen Can f 1

PDB ID 7dru

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