This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hpv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal Structure Analysis of the 2,3-dioxygenase LapB from Pseudomonas sp. KL28==
==Crystal Structure Analysis of the 2,3-dioxygenase LapB from Pseudomonas sp. KL28==
-
<StructureSection load='3hpv' size='340' side='right' caption='[[3hpv]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='3hpv' size='340' side='right'caption='[[3hpv]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hpv]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"pseudomonas_alkylphenolia"_veeranagouda_et_al._2009 "pseudomonas alkylphenolia" veeranagouda et al. 2009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HPV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hpv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"pseudomonas_alkylphenolia"_veeranagouda_et_al._2009 "pseudomonas alkylphenolia" veeranagouda et al. 2009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HPV FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pseudomonas sp. KL28 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=237609 "Pseudomonas alkylphenolia" Veeranagouda et al. 2009])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pseudomonas sp. KL28 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=237609 "Pseudomonas alkylphenolia" Veeranagouda et al. 2009])</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_2,3-dioxygenase Catechol 2,3-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.2 1.13.11.2] </span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Catechol_2,3-dioxygenase Catechol 2,3-dioxygenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.2 1.13.11.2] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hpv OCA], [http://pdbe.org/3hpv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hpv RCSB], [http://www.ebi.ac.uk/pdbsum/3hpv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hpv ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hpv OCA], [https://pdbe.org/3hpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hpv RCSB], [https://www.ebi.ac.uk/pdbsum/3hpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hpv ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 13: Line 13:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hp/3hpv_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hp/3hpv_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 28:
</div>
</div>
<div class="pdbe-citations 3hpv" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3hpv" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 34: Line 37:
[[Category: Pseudomonas alkylphenolia veeranagouda et al. 2009]]
[[Category: Pseudomonas alkylphenolia veeranagouda et al. 2009]]
[[Category: Catechol 2,3-dioxygenase]]
[[Category: Catechol 2,3-dioxygenase]]
 +
[[Category: Large Structures]]
[[Category: Cho, J H]]
[[Category: Cho, J H]]
[[Category: Rhee, S]]
[[Category: Rhee, S]]

Revision as of 11:54, 30 March 2022

Crystal Structure Analysis of the 2,3-dioxygenase LapB from Pseudomonas sp. KL28

PDB ID 3hpv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3hpv"
Personal tools