7s06
From Proteopedia
(Difference between revisions)
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==Cryo-EM structure of human GlcNAc-1-phosphotransferase A2B2 subcomplex== | ==Cryo-EM structure of human GlcNAc-1-phosphotransferase A2B2 subcomplex== | ||
| - | <StructureSection load='7s06' size='340' side='right'caption='[[7s06]]' scene=''> | + | <StructureSection load='7s06' size='340' side='right'caption='[[7s06]], [[Resolution|resolution]] 3.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7S06 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7S06 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7s06]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7S06 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7S06 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s06 OCA], [https://pdbe.org/7s06 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s06 RCSB], [https://www.ebi.ac.uk/pdbsum/7s06 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s06 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/UDP-N-acetylglucosamine--lysosomal-enzyme_N-acetylglucosaminephosphotransferase UDP-N-acetylglucosamine--lysosomal-enzyme N-acetylglucosaminephosphotransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.8.17 2.7.8.17] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s06 OCA], [https://pdbe.org/7s06 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s06 RCSB], [https://www.ebi.ac.uk/pdbsum/7s06 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s06 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Disease == | ||
| + | [[https://www.uniprot.org/uniprot/GNPTA_HUMAN GNPTA_HUMAN]] Mucolipidosis type 2;Mucolipidosis type 3. The disease is caused by mutations affecting the gene represented in this entry. The disease is caused by mutations affecting the gene represented in this entry. Defects in GNPTAB have been suggested to play a role in susceptibility to persistent stuttering. Stuttering is a common speech disorder characterized by repetitions, prolongations, and interruptions in the flow of speech.<ref>PMID:20147709</ref> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/GNPTA_HUMAN GNPTA_HUMAN]] Catalyzes the formation of mannose 6-phosphate (M6P) markers on high mannose type oligosaccharides in the Golgi apparatus. M6P residues are required to bind to the M6P receptors (MPR), which mediate the vesicular transport of lysosomal enzymes to the endosomal/prelysosomal compartment.<ref>PMID:19955174</ref> <ref>PMID:23733939</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Polymerization of actin into cytoskeletal filaments is coupled to its bound adenine nucleotides. The mechanism by which nucleotide modulates actin functions has not been evident from analyses of ATP- and ADP-bound crystal structures of the actin monomer. We report that NMR chemical shift differences between the two forms are globally distributed. Furthermore, microsecond-millisecond motions are spread throughout the molecule in the ATP form, but largely confined to subdomains 1 and 2, and the nucleotide binding site in the ADP form. Through these motions, the ATP- and ADP-bound forms sample different high-energy conformations. A deafness-causing, fast-nucleating actin mutant populates the high-energy conformer of ATP-actin more than the wild-type protein, suggesting that this conformer may be on the pathway to nucleation. Together, the data suggest a model in which differential sampling of a nucleation-compatible form of the actin monomer may contribute to control of actin filament dynamics by nucleotide. | ||
| + | |||
| + | Bound nucleotide can control the dynamic architecture of monomeric actin.,Ali R, Zahm JA, Rosen MK Nat Struct Mol Biol. 2022 Mar 24. pii: 10.1038/s41594-022-00743-5. doi:, 10.1038/s41594-022-00743-5. PMID:35332323<ref>PMID:35332323</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7s06" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Li H]] | + | [[Category: UDP-N-acetylglucosamine--lysosomal-enzyme N-acetylglucosaminephosphotransferase]] |
| + | [[Category: Li, H]] | ||
| + | [[Category: Glcnac-1-phosphotransferase]] | ||
| + | [[Category: Lysosomal hydrolase]] | ||
| + | [[Category: Mannose 6-phosphate trafficking pathway]] | ||
| + | [[Category: Transferase]] | ||
Revision as of 10:37, 6 April 2022
Cryo-EM structure of human GlcNAc-1-phosphotransferase A2B2 subcomplex
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