7ecd

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==Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg==
==Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg==
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<StructureSection load='7ecd' size='340' side='right'caption='[[7ecd]]' scene=''>
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<StructureSection load='7ecd' size='340' side='right'caption='[[7ecd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ECD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ECD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7ecd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ECD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ECD FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ecd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ecd OCA], [https://pdbe.org/7ecd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ecd RCSB], [https://www.ebi.ac.uk/pdbsum/7ecd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ecd ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CTP:CYTIDINE-5-TRIPHOSPHATE'>CTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphatidate_cytidylyltransferase Phosphatidate cytidylyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.41 2.7.7.41] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ecd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ecd OCA], [https://pdbe.org/7ecd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ecd RCSB], [https://www.ebi.ac.uk/pdbsum/7ecd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ecd ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Translocator assembly and maintenance 41 (Tam41) catalyzes the synthesis of cytidine diphosphate diacylglycerol (CDP-DAG), which is a high-energy intermediate phospholipid critical for generating cardiolipin in mitochondria. Although Tam41 is present almost exclusively in eukaryotic cells, a Firmicutes bacterium contains the gene encoding Tam41-type CDP-DAG synthase (FbTam41). FbTam41 converted phosphatidic acid (PA) to CDP-DAG using a ternary complex mechanism in vitro. Additionally, FbTam41 functionally substituted yeast Tam41 in vivo. These results demonstrate that Tam41-type CDP-DAG synthase functions in some prokaryotic cells. We determined the crystal structure of FbTam41 lacking the C-terminal 18 residues in the cytidine triphosphate (CTP)-Mg2+ bound form at a resolution of 2.6 A. The crystal structure showed that FbTam41 contained a positively charged pocket that specifically accommodated CTP-Mg2+ and PA in close proximity. By using this structure, we constructed a model for the full-length structure of FbTam41 containing the last alpha-helix, which was missing in the crystal structure. Based on this model, we propose a molecular mechanism for CDP-DAG synthesis in bacterial cells and mitochondria.
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Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.,Kimura K, Kawai F, Kubota-Kawai H, Watanabe Y, Tomii K, Kojima R, Hirata K, Yamamori Y, Endo T, Tamura Y J Biochem. 2021 Dec 29. pii: 6488380. doi: 10.1093/jb/mvab154. PMID:34964897<ref>PMID:34964897</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7ecd" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kawai F]]
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[[Category: Phosphatidate cytidylyltransferase]]
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[[Category: Kimura K]]
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[[Category: Kawai, F]]
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[[Category: Kubota-Kawai H]]
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[[Category: Kimura, K]]
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[[Category: Tamura Y]]
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[[Category: Kubota-Kawai, H]]
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[[Category: Watanabe Y]]
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[[Category: Tamura, Y]]
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[[Category: Watanabe, Y]]
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[[Category: Cdp-dag synthase]]
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[[Category: Cytidine-diphosphate diacylglycerol]]
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[[Category: Mitochondrial matrix]]
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[[Category: Phosphatidic acid]]
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[[Category: Transferase]]

Revision as of 10:18, 13 April 2022

Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg

PDB ID 7ecd

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