Sandbox Reserved 1715

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 45: Line 45:
== Conformational Changes ==
== Conformational Changes ==
-
'''1.''' (Figure 3-1) In its resting state, mGlu is in an <scene name='90/904320/Inactive_mglu2_first_picture/6'>inactive homodimeric form</scene>. In this conformation, the receptor is considered open with an inter-lobe angle of 44°<ref name="Seven">PMID:34194039</ref>. The structure has two free glutamate binding sites in the VFT, the CRDs are separated, and the TMD is not interacting with a G-protein<ref name="Seven">PMID:34194039</ref>.
+
'''1.''' In its resting state, mGlu is in an <scene name='90/904320/Inactive_mglu2_first_picture/6'>inactive homodimeric form</scene>(Figure 3-1). In this conformation, the receptor is considered open with an inter-lobe angle of 44°<ref name="Seven">PMID:34194039</ref>. The structure has two free glutamate binding sites in the VFT, the CRDs are separated, and the TMD is not interacting with a G-protein<ref name="Seven">PMID:34194039</ref>.
-
'''2.''' (Figure 3-2) In the intermediate activation state, also known as the open-closed conformation, one glutamate is bound in one binding pocket of VFT. This single <scene name='90/904320/Mglu_binding/9'>glutamate bound state</scene> is still considered inactive as the receptor has not changed the conformations in the CRD and thus the TMD. With the same asymmetric transmembrane helices formation, a <scene name='90/904320/Inactive_tmd_interface/1'>TM3-TM4 interface</scene> is still present and mGlu cannot interact with a G-protein<ref name="Seven">PMID:34194039</ref>.
+
'''2.''' In the intermediate activation state, also known as the open-closed conformation, one glutamate is bound in one binding pocket of VFT (Figure 3-2). This single <scene name='90/904320/Mglu_binding/9'>glutamate bound state</scene> is still considered inactive as the receptor has not changed the conformations in the CRD and thus the TMD. With the same asymmetric transmembrane helices formation, a <scene name='90/904320/Inactive_tmd_interface/1'>TM3-TM4 interface</scene> is still present and mGlu cannot interact with a G-protein<ref name="Seven">PMID:34194039</ref>.
[[Image:Overview_mGlu_2.jpg|900 px|center|thumb|Figure 4. Illustration of mGlu's conformational change process.]]
[[Image:Overview_mGlu_2.jpg|900 px|center|thumb|Figure 4. Illustration of mGlu's conformational change process.]]
-
'''3.''' (Figure 3-3) A second glutamate then binds to the other <scene name='90/904320/Active_site_interactions/4'>binding pocket</scene> of the VFT. Mediated by L639, F643, N735, W773, and F776, a <scene name='90/904320/Pam/8'>positive allosteric modulator</scene> (PAM) also binds within the seven TMD helices of the alpha chain <ref name="Seven">PMID:34194039</ref>. This closed conformation of the VFT now has an inter-lobe angle of 25° is considered to be in the <scene name='90/904320/Active_mglu/10'>active conformation</scene><ref name="Seven">PMID:34194039</ref>. The binding of these [https://en.wikipedia.org/wiki/Ligand ligands] allows the CRDs to compact and come together. This conformational transformation causes the TMD to form a separate, active asymmetric conformation with a <scene name='90/904320/Active_helices/14'>TM6-TM6 interface</scene> between the chains (Figure 3)<ref name="Seven">PMID:34194039</ref>.
+
'''3.''' A second glutamate then binds to the other <scene name='90/904320/Active_site_interactions/4'>binding pocket</scene> of the VFT (Figure 3-3). Mediated by L639, F643, N735, W773, and F776, a <scene name='90/904320/Pam/8'>positive allosteric modulator</scene> (PAM) also binds within the seven TMD helices of the alpha chain <ref name="Seven">PMID:34194039</ref>. This closed conformation of the VFT now has an inter-lobe angle of 25° is considered to be in the <scene name='90/904320/Active_mglu/10'>active conformation</scene><ref name="Seven">PMID:34194039</ref>. The binding of these [https://en.wikipedia.org/wiki/Ligand ligands] allows the CRDs to compact and come together. This conformational transformation causes the TMD to form a separate, active asymmetric conformation with a <scene name='90/904320/Active_helices/14'>TM6-TM6 interface</scene> between the chains (Figure 3)<ref name="Seven">PMID:34194039</ref>.
[[Image:Screen Shot 2022-04-18 at 10.20.26 PM.png|300 px|right|thumb|Figure 5. The interaction between an active mGlu (magenta/lime/purple/crimson) and a G-protein (orange). Hydrogen bonds are shown through black dashes]]
[[Image:Screen Shot 2022-04-18 at 10.20.26 PM.png|300 px|right|thumb|Figure 5. The interaction between an active mGlu (magenta/lime/purple/crimson) and a G-protein (orange). Hydrogen bonds are shown through black dashes]]
-
'''4.''' (Figure 3-4/5) The crossover of the helices from the alpha and beta chains allows for intracellular loop 2 (ICL2) and the C-terminus to be properly ordered to interact with a single G-protein<ref name="Seven">PMID:34194039</ref>. While hydrogen bonding is present between the C-terminus and alpha helix 5 of the G-protein, this <scene name='90/904320/Active_mglu/9'>mGlu/G-protein coupling</scene> is primarily driven by the hydrophobic interactions in the interface with the ɑ5 helix of the G-protein<ref name="Seven">PMID:34194039</ref>(Figure 5). This coupling can only occur in the presence of a <scene name='90/904320/Pam/8'>PAM</scene> as the pocket in which the coupling occurs would be completely closed in its absence<ref name="Seven">PMID:34194039</ref>.
+
'''4.''' The crossover of the helices from the alpha and beta chains allows for intracellular loop 2 (ICL2) and the C-terminus to be properly ordered to interact with a single G-protein<ref name="Seven">PMID:34194039</ref> (Figure 3-4/5). While hydrogen bonding is present between the C-terminus and alpha helix 5 of the G-protein, this <scene name='90/904320/Active_mglu/9'>mGlu/G-protein coupling</scene> is primarily driven by the hydrophobic interactions in the interface with the ɑ5 helix of the G-protein<ref name="Seven">PMID:34194039</ref>(Figure 5). This coupling can only occur in the presence of a <scene name='90/904320/Pam/8'>PAM</scene> as the pocket in which the coupling occurs would be completely closed in its absence<ref name="Seven">PMID:34194039</ref>.
-
'''5.''' (Figure 3-4/5) Upon binding, the G-protein can become active through the receptor catalyzed reaction of GDP to GTP on the alpha subunit of the G-protein. Depending on the type of mGlu present, this activation causes different signaling cascades to occur within the cell <ref name="Lin">PMID:34135510</ref>. These cascades are necessary for cellular function as they can play primary roles in regulating metabolic molecules, [https://en.wikipedia.org/wiki/Ion_channel ion channels], transporter molecules, and several other parts of the cell; if these proteins are mutated, various diseases can occur<ref name="Crupi">PMID:30800054</ref>.
+
'''5.''' Upon binding, the G-protein can become active through the receptor catalyzed reaction of GDP to GTP on the alpha subunit of the G-protein (Figure 3-4/5). Depending on the type of mGlu present, this activation causes different signaling cascades to occur within the cell <ref name="Lin">PMID:34135510</ref>. These cascades are necessary for cellular function as they can play primary roles in regulating metabolic molecules, [https://en.wikipedia.org/wiki/Ion_channel ion channels], transporter molecules, and several other parts of the cell; if these proteins are mutated, various diseases can occur<ref name="Crupi">PMID:30800054</ref>.
== Clinical Relevance ==
== Clinical Relevance ==

Revision as of 15:19, 19 April 2022

Metabotropic Glutamate Receptor

Metabotropic Glutamate Receptor PDB:7epa

Drag the structure with the mouse to rotate

Student Contributors

  • Courtney Vennekotter
  • Cade Chezem
Personal tools