Transcriptional activator 3D structures

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Line 29: Line 29:
*Psp operon TA
*Psp operon TA
-
**[[2bjw]] – EcTA AAA domain – Escherichia coli<br />
+
**[[2bjw]] – EcTA AAA domain –'' Escherichia coli''<br />
-
 
+
**[[4qnr]] – EcTA AAA domain (mutant) + ATP<br />
**[[4qnr]] – EcTA AAA domain (mutant) + ATP<br />
**[[4qos]] – EcTA AAA domain (mutant) + ADP<br />
**[[4qos]] – EcTA AAA domain (mutant) + ADP<br />
Line 40: Line 39:
*TenA TA
*TenA TA
-
**[[1tyh]], [[1yaf]] – BsTA – Bacillus subtilis<br />
+
**[[1tyh]], [[1yaf]] – BsTA – ''Bacillus subtilis''<br />
-
**[[2qzc]] – TA – Sulfolobus solfataricus<br />
+
**[[2qzc]] – TA – ''Sulfolobus solfataricus''<br />
-
**[[3no6]] – TA – Staphylococcus epidermidis<br />
+
**[[3no6]] – TA – ''Staphylococcus epidermidis''<br />
**[[1yak]] – BsTA + pyrimidine derivative<br />
**[[1yak]] – BsTA + pyrimidine derivative<br />
**[[2qcx]] – BsTA (mutant) + pyrimidine derivative<br />
**[[2qcx]] – BsTA (mutant) + pyrimidine derivative<br />
-
**[[1udd]] – TA – Pyrococcus horikishii<br />
+
**[[1udd]] – TA – ''Pyrococcus horikishii''<br />
*LasR TA or transcriptional regulator LasR
*LasR TA or transcriptional regulator LasR
-
**[[6mww]] – PaTA – Pseudomonas aeruginosa<br />
+
**[[6mww]] – PaTA – ''Pseudomonas aeruginosa''<br />
**[[2uv0]] – PaTA LBD residues 1-173 <br />
**[[2uv0]] – PaTA LBD residues 1-173 <br />
**[[3ix3]], [[6mvn]], [[6mvm]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone<br />
**[[3ix3]], [[6mvn]], [[6mvm]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone<br />
Line 88: Line 87:
*Tipa TA
*Tipa TA
-
**[[1ny9]] – SlTA antibiotic binding domain – Streptomyces lividans - NMR<br />
+
**[[1ny9]] – SlTA antibiotic binding domain – ''Streptomyces lividans'' - NMR<br />
**[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR<br />
**[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR<br />
**[[1r8d]] – BsTA <br />
**[[1r8d]] – BsTA <br />
Line 102: Line 101:
**[[2zhh]] – EcTA <br />
**[[2zhh]] – EcTA <br />
**[[2zhg]] – EcTA + DNA<br />
**[[2zhg]] – EcTA + DNA<br />
-
**[[6tf4]] – VcTA C terminal - Vibrio cholera - NMR<br />
+
**[[6tf4]] – VcTA C terminal - ''Vibrio cholera'' - NMR<br />
*GlxR TA
*GlxR TA
-
**[[3r6s]] – CgTA +cAMP – Corynebacterium glutamicum <br />
+
**[[3r6s]] – CgTA +cAMP – ''Corynebacterium glutamicum'' <br />
**[[4byy]] – CgTA <br />
**[[4byy]] – CgTA <br />
*OxyR TA or hydrogen peroxide-inducible genes activator
*OxyR TA or hydrogen peroxide-inducible genes activator
-
**[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – Porphyromonas gingivalis <br />
+
**[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – ''Porphyromonas gingivalis'' <br />
-
**[[7l4s]] – TA regulatory domain – Shewnella oneidensis<br />
+
**[[7l4s]] – TA regulatory domain – ''Shewnella oneidensis''<br />
**[[4y0m]] – PaTA regulatory domain <br />
**[[4y0m]] – PaTA regulatory domain <br />
**[[4x6g]], [[4xws]] – PaTA regulatory domain (mutant)<br />
**[[4x6g]], [[4xws]] – PaTA regulatory domain (mutant)<br />
Line 118: Line 117:
**[[6g1d]] – CgTA regulatory domain (mutant)<br />
**[[6g1d]] – CgTA regulatory domain (mutant)<br />
**[[6g1b]], [[6g4r]] – CgTA regulatory domain + H2O2<br />
**[[6g1b]], [[6g4r]] – CgTA regulatory domain + H2O2<br />
-
**[[5x0v]] – VvTA - Vibrio vulnificus<br />
+
**[[5x0v]] – VvTA - ''Vibrio vulnificus''<br />
**[[5b70]], [[5b7d]], [[5b7h]], [[5x0q]] – VvTA (mutant) <br />
**[[5b70]], [[5b7d]], [[5b7h]], [[5x0q]] – VvTA (mutant) <br />
-
**[[3jv9]] – NmTA – Neisseria meningitidis <br />
+
**[[3jv9]] – NmTA – ''Neisseria meningitidis'' <br />
*PlcR TA
*PlcR TA
-
**[[4fsc]] – BtTA - Bacillus thuringiensis <br />
+
**[[4fsc]] – BtTA - ''Bacillus thuringiensis'' <br />
**[[2qfc]] – BtTA + PapR peptide <br />
**[[2qfc]] – BtTA + PapR peptide <br />
**[[3u3w]] – BtTA + DNA + PapR peptide <br />
**[[3u3w]] – BtTA + DNA + PapR peptide <br />
Line 130: Line 129:
*VirB TA or virulence regulon transcriptional activator VirB
*VirB TA or virulence regulon transcriptional activator VirB
-
**[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – Shigella flexneri<br />
+
**[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – ''Shigella flexneri''<br />
*MafA TA
*MafA TA
Line 138: Line 137:
*CysB TA or Cys regulon transcriptional activator CysB
*CysB TA or Cys regulon transcriptional activator CysB
-
**[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – Salmonella typhimurium<br />
+
**[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – ''Salmonella typhimurium''<br />
**[[4lq2]], [[4lq5]], [[4m4g]] – StTA C terminal + acetylserine<br />
**[[4lq2]], [[4lq5]], [[4m4g]] – StTA C terminal + acetylserine<br />
-
**[[1al3]] – TA cofactor binding domain – Klebsiella aerogenes<br />
+
**[[1al3]] – TA cofactor binding domain – ''Klebsiella aerogenes''<br />
**[[5z50]] – PaTA regulatory domain <br />
**[[5z50]] – PaTA regulatory domain <br />
**[[5z4y]], [[5z4z]] – PaTA NTD domain <br />
**[[5z4y]], [[5z4z]] – PaTA NTD domain <br />
Line 163: Line 162:
**[[6yiz]], [[7nbw]] – PaTA + agonist<br />
**[[6yiz]], [[7nbw]] – PaTA + agonist<br />
**[[5z7h]] – SaTA <br />
**[[5z7h]] – SaTA <br />
-
**[[4pzj]] – TA – Eggerthella lenta<br />
+
**[[4pzj]] – TA – ''Eggerthella lenta''<br />
**[[3hhf]], [[3hhg]], [[4ab5]] – NmTA <br />
**[[3hhf]], [[3hhg]], [[4ab5]] – NmTA <br />
-
**[[3fzj]] – TA – Comamonas testosteroni<br />
+
**[[3fzj]] – TA – ''Comamonas testosteroni''<br />
-
**[[1ixc]], [[1iz1]] – CnTA – Cupriavidus necator<br />
+
**[[1ixc]], [[1iz1]] – CnTA – ''Cupriavidus necator''<br />
**[[5xxp]], [[7d98]] – CnTA + DNA<br />
**[[5xxp]], [[7d98]] – CnTA + DNA<br />
-
**[[1uth]], [[2y7r]], [[5ae4]] – TA – Burkholderia cepacia<br />
+
**[[1uth]], [[2y7r]], [[5ae4]] – TA – ''Burkholderia cepacia''<br />
-
**[[7trv]], [[7trw]] – TA LBD – Yersinia pestis<br />
+
**[[7trv]], [[7trw]] – TA LBD – ''Yersinia pestis''<br />
-
**[[7erp]], [[7erq]] – CsTA regulatory domain – Cronobacter sakazakii<br />
+
**[[7erp]], [[7erq]] – CsTA regulatory domain – ''Cronobacter sakazakii''<br />
**[[7fdf]] – CsTA regulatory domain (mutant) <br />
**[[7fdf]] – CsTA regulatory domain (mutant) <br />
Line 179: Line 178:
*Mga TA
*Mga TA
-
**[[5way]] – SpTA – Streptococcus pneumoniae<br />
+
**[[5way]] – SpTA – ''Streptococcus pneumoniae''<br />
*Spt7 TA
*Spt7 TA
Line 187: Line 186:
*Quorum-sensing TA or TraR
*Quorum-sensing TA or TraR
-
**[[5l07]] – YeTA – Yersinia enterocolitica<br />
+
**[[5l07]] – YeTA – ''Yersinia enterocolitica''<br />
**[[5l09]] – YeTA + THF derivative<br />
**[[5l09]] – YeTA + THF derivative<br />
-
**[[1l3l]] – AtTA + pheromone + DNA – Agrobacterium tumefaciens <br />
+
**[[1l3l]] – AtTA + pheromone + DNA – ''Agrobacterium tumefaciens'' <br />
**[[1h0m]] – AtTA + auto-inducer + DNA <br />
**[[1h0m]] – AtTA + auto-inducer + DNA <br />
Line 198: Line 197:
*ComR TA
*ComR TA
-
**[[5juf]], [[6qer]] – StTA – Streptococcus thermophilus<br />
+
**[[5juf]], [[6qer]] – StTA – ''Streptococcus thermophilus''<br />
**[[5jub]] – StTA + DNA<br />
**[[5jub]] – StTA + DNA<br />
-
**[[5fd4]] – TA – Streptococcus suis<br />
+
**[[5fd4]] – TA – ''Streptococcus suis''<br />
-
**[[7n10]], [[7n1n]] – SmTA DBD + Prx – Streptococcus mutans<br />
+
**[[7n10]], [[7n1n]] – SmTA DBD + Prx – ''Streptococcus mutans''<br />
-
**[[6hu8]] – SvTA – Streptococcus vestibularis<br />
+
**[[6hu8]] – SvTA – ''Streptococcus vestibularis''<br />
**[[6hua]] – SvTA + peptide<br />
**[[6hua]] – SvTA + peptide<br />
*FasR TA
*FasR TA
-
**[[6o6p]] – MtTA + DNA – Mycobacterium tuberculosis<br />
+
**[[6o6p]] – MtTA + DNA – ''Mycobacterium tuberculosis''<br />
**[[6o6o]] – MtTA + myristic acid<br />
**[[6o6o]] – MtTA + myristic acid<br />
**[[6o6n]] – MtTA + arachinoyl-CoA<br />
**[[6o6n]] – MtTA + arachinoyl-CoA<br />
Line 218: Line 217:
*TetR family TA
*TetR family TA
-
**[[1z77]], [[2id6]], [[2iek]], [[1zkg]], [[4i76]], [[3ih2]], [[3ih3]], [[3ih4]] – TmTA – Thermotoga maritima<br />
+
**[[1z77]], [[2id6]], [[2iek]], [[1zkg]], [[4i76]], [[3ih2]], [[3ih3]], [[3ih4]] – TmTA – ''Thermotoga maritima''<br />
**[[4i6z]] – TmTA + DNA<br />
**[[4i6z]] – TmTA + DNA<br />
-
**[[1zk8]], [[2fq4]], [[4me9]] – BcTA – Bacillus cereus<br />
+
**[[1zk8]], [[2fq4]], [[4me9]] – BcTA – ''Bacillus cereus''<br />
-
**[[3cwr]] – TA – Rhodspirillum rubrum<br />
+
**[[3cwr]] – TA – ''Rhodspirillum rubrum''<br />
-
**[[1z0x]] – EfTA – Enterococcus faecalis<br />
+
**[[1z0x]] – EfTA – ''Enterococcus faecalis''<br />
-
**[[3c2b]] – AfTA – Agrobacterium fabrum<br />
+
**[[3c2b]] – AfTA – ''Agrobacterium fabrum''<br />
**[[2o7t]] – CgTA <br />
**[[2o7t]] – CgTA <br />
**[[2g7s]] – AtTA <br />
**[[2g7s]] – AtTA <br />
-
**[[3gzi]] – TA – Shewanella loihica<br />
+
**[[3gzi]] – TA – ''Shewanella loihica''<br />
-
**[[2qib]], [[2zcx]], [[6srm]] – ScTA – Streptomyces coelicolor<br />
+
**[[2qib]], [[2zcx]], [[6srm]] – ScTA – ''Streptomyces coelicolor''<br />
-
**[[2hyt]] – TA – Pectobacterium atrosepticum<br />
+
**[[2hyt]] – TA – ''Pectobacterium atrosepticum''<br />
-
**[[3cdl]] – PsTA – Pseudomonas syringae<br />
+
**[[3cdl]] – PsTA – ''Pseudomonas syringae''<br />
-
**[[3kkc]] – SaTA – Streptococcus agalactiae<br />
+
**[[3kkc]] – SaTA – ''Streptococcus agalactiae''<br />
-
**[[3nnr]] – TA – Marinobacter aquaeolei<br />
+
**[[3nnr]] – TA – ''Marinobacter aquaeolei''<br />
-
**[[3on4]] – TA – Legionella pneumophila<br />
+
**[[3on4]] – TA – ''Legionella pneumophila''<br />
-
**[[3f1b]] – RjTA – Rhodococcus jostii<br />
+
**[[3f1b]] – RjTA – ''Rhodococcus jostii''<br />
-
**[[3eup]] – TA – Cytophaga hutchinsonii<br />
+
**[[3eup]] – TA – ''Cytophaga hutchinsoni''i<br />
-
**[[3egq]] – TA – Archaeoglobus fulgidus<br />
+
**[[3egq]] – TA – ''Archaeoglobus fulgidus''<br />
**[[4hku]] – LmTA – Listeria monocytogenes<br />
**[[4hku]] – LmTA – Listeria monocytogenes<br />
-
**[[3nrg]], [[3qbm]] – TA – Chlotoflexus aurantiacus<br />
+
**[[3nrg]], [[3qbm]] – TA – ''Chlotoflexus aurantiacus''<br />
**[[6nsr]] – PaTA (mutant) + DNA<br />
**[[6nsr]] – PaTA (mutant) + DNA<br />
-
**[[4jkz]] – MsTA – Mycobacterium smegmatis<br />
+
**[[4jkz]] – MsTA – ''Mycobacterium smegmatis''<br />
-
**[[6el2]] – SacTA – Sulfolobus acidocaldarius<br />
+
**[[6el2]] – SacTA – ''Sulfolobus acidocaldarius''<br />
**[[6en8]] – SacTA + DNA<br />
**[[6en8]] – SacTA + DNA<br />
Line 247: Line 246:
**[[2rae]] – RjTA <br />
**[[2rae]] – RjTA <br />
**[[3lhq]] – StTA <br />
**[[3lhq]] – StTA <br />
-
**[[3b81]] – CpTA – Clostridium acetobutylicum<br />
+
**[[3b81]] – CpTA – ''Clostridium acetobutylicum''<br />
-
**[[3dcf]] – TA – Thermobifida fusca<br />
+
**[[3dcf]] – TA – ''Thermobifida fusca''<br />
**[[3mvp]] – SmTA <br />
**[[3mvp]] – SmTA <br />
**[[5d18]], [[5d19]], [[6a4l]], [[6a4w]] – MtTA <br />
**[[5d18]], [[5d19]], [[6a4l]], [[6a4w]] – MtTA <br />
-
**[[2eh3]] – TA – Aquifex aeolicus<br />
+
**[[2eh3]] – TA – ''Aquifex aeolicus''<br />
-
**[[3vuq]] – TtTA – Thermus thermophilus<br />
+
**[[3vuq]] – TtTA – ''Thermus thermophilus''<br />
-
**[[7eqe]] – SgTA – Streptococcus griseus<br />
+
**[[7eqe]] – SgTA – ''Streptococcus griseus''<br />
**[[7eqf]] – SgTA + ligand<br />
**[[7eqf]] – SgTA + ligand<br />
-
**[[5gp9]], [[5gpa]] – BhTA – Bacillus halodurans<br />
+
**[[5gp9]], [[5gpa]] – BhTA – ''Bacillus halodurans''<br />
**[[5gpc]] – BhTA + DNA <br />
**[[5gpc]] – BhTA + DNA <br />
-
**[[6g87]] – BdTA – Bradyrhizobium diazoefficiens<br />
+
**[[6g87]] – BdTA – ''Bradyrhizobium diazoefficiens''<br />
**[[6g8h]] – BdTA + naringenin <br />
**[[6g8h]] – BdTA + naringenin <br />
**[[6g8g]] – BdTA + genistein <br />
**[[6g8g]] – BdTA + genistein <br />
Line 268: Line 267:
**[[3c7j]] – PsTA <br />
**[[3c7j]] – PsTA <br />
**[[2di3]], [[2p19]] – CgTA <br />
**[[2di3]], [[2p19]] – CgTA <br />
-
**[[3tqn]] – TA – Coxiella burnetii<br />
+
**[[3tqn]] – TA –'' Coxiella burnetii''<br />
**[[6za0]], [[6za3]], [[7za7]] – AfTA <br />
**[[6za0]], [[6za3]], [[7za7]] – AfTA <br />
**[[6z74]], [[6zab]] – AfTA + DNA<br />
**[[6z74]], [[6zab]] – AfTA + DNA<br />
-
**[[7u5q]] – TA – Brucella melitensis<br />
+
**[[7u5q]] – TA – ''Brucella melitensis''<br />
**[[6sbs]] – SacTA <br />
**[[6sbs]] – SacTA <br />
-
**[[3h5o]] – TA – Chromobacterium violaceum <br />
+
**[[3h5o]] – TA – ''Chromobacterium violaceum'' <br />
**[[6az6]], [[7b5t]], [[7b5y]], [[7b5w]] – SaTA <br />
**[[6az6]], [[7b5t]], [[7b5y]], [[7b5w]] – SaTA <br />
**[[7b5u]] – SaTA + diAMP <br />
**[[7b5u]] – SaTA + diAMP <br />
**[[7oz3]] – SaTA + DNA – Cryo EM<br />
**[[7oz3]] – SaTA + DNA – Cryo EM<br />
**[[4r1h]] – LmTA <br />
**[[4r1h]] – LmTA <br />
-
**[[3ihu]] – TA – Ralstonia eutropha <br />
+
**[[3ihu]] – TA – ''Ralstonia eutropha'' <br />
-
**[[3lhe]] – TA – Bacillus anthracis <br />
+
**[[3lhe]] – TA – ''Bacillus anthracis'' <br />
**[[3f8m]] – MsTA <br />
**[[3f8m]] – MsTA <br />

Revision as of 10:26, 4 May 2022

3D Structures of transcriptional activator

Updated on 04-May-2022 - For a general description of the protein see Transcriptional activator


Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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