3jb9
From Proteopedia
(Difference between revisions)
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<SX load='3jb9' size='340' side='right' viewer='molstar' caption='[[3jb9]], [[Resolution|resolution]] 3.60Å' scene=''> | <SX load='3jb9' size='340' side='right' viewer='molstar' caption='[[3jb9]], [[Resolution|resolution]] 3.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3jb9]] is a 43 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3jb9]] is a 43 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe] and [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe_972h- Schizosaccharomyces pombe 972h-]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JB9 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | ||
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jb9 OCA], [https://pdbe.org/3jb9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jb9 RCSB], [https://www.ebi.ac.uk/pdbsum/3jb9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jb9 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [[ | + | [[https://www.uniprot.org/uniprot/RU2B_SCHPO RU2B_SCHPO]] Involved in pre-mRNA splicing. This protein is associated with snRNP U2. It binds stem loop IV of U2 snRNA (By similarity). [[https://www.uniprot.org/uniprot/SLT11_SCHPO SLT11_SCHPO]] Facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome. Binds to RNA (By similarity). Involved in pre-mRNA splicing. [[https://www.uniprot.org/uniprot/SMD2_SCHPO SMD2_SCHPO]] Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity). [[https://www.uniprot.org/uniprot/CWC15_SCHPO CWC15_SCHPO]] Involved in pre-mRNA splicing. [[https://www.uniprot.org/uniprot/SN114_SCHPO SN114_SCHPO]] Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP. [[https://www.uniprot.org/uniprot/SPP42_SCHPO SPP42_SCHPO]] Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures (By similarity). Required for pre-spliceosome formation, which is the first step of pre-mRNA splicing. This protein is associated with snRNP U5. Has a role in branch site-3' splice site selection. Associates with the branch site-3' splice 3'-exon region.<ref>PMID:16133344</ref> [[https://www.uniprot.org/uniprot/PRP19_SCHPO PRP19_SCHPO]] Probable ubiquitin-protein ligase involved in pre-mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. May also function in DNA repair.[UniProtKB:P32523] [[https://www.uniprot.org/uniprot/CWF11_SCHPO CWF11_SCHPO]] Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. [[https://www.uniprot.org/uniprot/SPF27_SCHPO SPF27_SCHPO]] Involved in mRNA splicing. [[https://www.uniprot.org/uniprot/PRP17_SCHPO PRP17_SCHPO]] Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides.<ref>PMID:15452114</ref> [[https://www.uniprot.org/uniprot/CWC2_SCHPO CWC2_SCHPO]] Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the "nineteen complex" NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic phases of the spliceosome cycle (By similarity). Involved in pre-mRNA splicing.<ref>PMID:2721492</ref> [[https://www.uniprot.org/uniprot/CWF14_SCHPO CWF14_SCHPO]] Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. [[https://www.uniprot.org/uniprot/RUXG_SCHPO RUXG_SCHPO]] Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity). [[https://www.uniprot.org/uniprot/RU2A_SCHPO RU2A_SCHPO]] Involved in pre-mRNA splicing. This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA (By similarity). [[https://www.uniprot.org/uniprot/CWF19_SCHPO CWF19_SCHPO]] Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. Involved in mRNA splicing. [[https://www.uniprot.org/uniprot/PRP45_SCHPO PRP45_SCHPO]] Involved in pre-mRNA splicing. [[https://www.uniprot.org/uniprot/PPIL1_SCHPO PPIL1_SCHPO]] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). [[https://www.uniprot.org/uniprot/SMD1_SCHPO SMD1_SCHPO]] Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity). [[https://www.uniprot.org/uniprot/RUXF_SCHPO RUXF_SCHPO]] Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity). [[https://www.uniprot.org/uniprot/CWF17_SCHPO CWF17_SCHPO]] Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. [[https://www.uniprot.org/uniprot/RUXE_SCHPO RUXE_SCHPO]] Involved in pre-mRNA splicing. Binds and is required for the stability of snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site. Involved in cap modification (By similarity).[UniProtKB:Q12330] [[https://www.uniprot.org/uniprot/SMD3_SCHPO SMD3_SCHPO]] Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity). [[https://www.uniprot.org/uniprot/CEF1_SCHPO CEF1_SCHPO]] Involved in mRNA splicing and cell cycle control.<ref>PMID:10409726</ref> <ref>PMID:8313892</ref> [[https://www.uniprot.org/uniprot/RSMB_SCHPO RSMB_SCHPO]] Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity). |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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==See Also== | ==See Also== | ||
*[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]] | *[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]] | ||
+ | *[[Sm-like protein|Sm-like protein]] | ||
== References == | == References == | ||
<references/> | <references/> |
Revision as of 13:30, 4 May 2022
Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution
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