7s77
From Proteopedia
(Difference between revisions)
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==Crystal structure of the G391V variant of human PGM-1== | ==Crystal structure of the G391V variant of human PGM-1== | ||
- | <StructureSection load='7s77' size='340' side='right'caption='[[7s77]]' scene=''> | + | <StructureSection load='7s77' size='340' side='right'caption='[[7s77]], [[Resolution|resolution]] 2.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7S77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7S77 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7s77]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7S77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7S77 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s77 OCA], [https://pdbe.org/7s77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s77 RCSB], [https://www.ebi.ac.uk/pdbsum/7s77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s77 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7s0w|7s0w]]</div></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoglucomutase Phosphoglucomutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.2 5.4.2.2] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s77 OCA], [https://pdbe.org/7s77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s77 RCSB], [https://www.ebi.ac.uk/pdbsum/7s77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s77 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Disease == | ||
+ | [[https://www.uniprot.org/uniprot/PGM1_HUMAN PGM1_HUMAN]] PGM-CDG;Glycogen storage disease due to phosphoglucomutase deficiency. The disease is caused by mutations affecting the gene represented in this entry. | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/PGM1_HUMAN PGM1_HUMAN]] This enzyme participates in both the breakdown and synthesis of glucose. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Phosphoglucomutase 1 (PGM1) plays a central role in glucose homeostasis in human cells. Missense variants of this enzyme cause an inborn error of metabolism, which is categorized as a congenital disorder of glycosylation. Here, two disease-related variants of PGM1, T337M and G391V, which are both located in domain 3 of the four-domain protein, were characterized via X-ray crystallography and biochemical assays. The studies show multiple impacts resulting from these dysfunctional variants, including both short- and long-range structural perturbations. In the T337M variant these are limited to a small shift in an active-site loop, consistent with reduced enzyme activity. In contrast, the G391V variant produces a cascade of structural perturbations, including displacement of both the catalytic phosphoserine and metal-binding loops. This work reinforces several themes that were found in prior studies of dysfunctional PGM1 variants, including increased structural flexibility and the outsized impacts of mutations affecting interdomain interfaces. The molecular mechanisms of PGM1 variants have implications for newly described inherited disorders of related enzymes. | ||
+ | |||
+ | Effects of the T337M and G391V disease-related variants on human phosphoglucomutase 1: structural disruptions large and small.,Stiers KM, Owuocha LF, Beamer LJ Acta Crystallogr F Struct Biol Commun. 2022 May 1;78(Pt 5):200-209. doi:, 10.1107/S2053230X22004174. Epub 2022 Apr 25. PMID:35506765<ref>PMID:35506765</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7s77" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Beamer | + | [[Category: Phosphoglucomutase]] |
- | [[Category: Stiers | + | [[Category: Beamer, L J]] |
+ | [[Category: Stiers, K M]] | ||
+ | [[Category: Enzyme]] | ||
+ | [[Category: Isomerase]] | ||
+ | [[Category: Missense variant]] |
Revision as of 10:25, 18 May 2022
Crystal structure of the G391V variant of human PGM-1
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