7vhr
From Proteopedia
(Difference between revisions)
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==Apostichopus japonicus ferritin== | ==Apostichopus japonicus ferritin== | ||
- | <StructureSection load='7vhr' size='340' side='right'caption='[[7vhr]]' scene=''> | + | <StructureSection load='7vhr' size='340' side='right'caption='[[7vhr]], [[Resolution|resolution]] 2.76Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VHR FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7vhr]] is a 24 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VHR FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vhr OCA], [https://pdbe.org/7vhr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vhr RCSB], [https://www.ebi.ac.uk/pdbsum/7vhr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vhr ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vhr OCA], [https://pdbe.org/7vhr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vhr RCSB], [https://www.ebi.ac.uk/pdbsum/7vhr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vhr ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/Q2QJV4_STIJA Q2QJV4_STIJA]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Ferritin is considered to be an ubiquitous and conserved iron-binding protein that plays a crucial role in iron storage, detoxification, and immune response. Although ferritin is of critical importance for almost all kingdoms of life, there is a lack of knowledge about its role in the marine invertebrate sea cucumber (Apostichopus japonicus). In this study, we characterized the first crystal structure of A. japonicus ferritin (AjFER) at 2.75 A resolution. The structure of AjFER shows a 4-3-2 symmetry cage-like hollow shell composed of 24 subunits, mostly similar to the structural characteristics of other known ferritin species, including the conserved ferroxidase center and 3-fold channel. The 3-fold channel consisting of three 3-fold negative amino acid rings suggests a potential pathway in which metal ions can be first captured by Asp120 from the outside environment, attracted by His116 and Cys128 when entering the channel, and then transferred by Glu138 from the 3-fold channel to the ferroxidase site. Overall, the presented crystal structure of AjFER may provide insights into the potential mechanism of the metal transport pathway for related marine invertebrate ferritins. | ||
+ | |||
+ | Crystallographic characterization of a marine invertebrate ferritin from the sea cucumber Apostichopus japonicus.,Wu Y, Ming T, Huo C, Qiu X, Su C, Lu C, Zhou J, Li Y, Su X FEBS Open Bio. 2022 Mar;12(3):664-674. doi: 10.1002/2211-5463.13375. Epub 2022, Feb 7. PMID:35090095<ref>PMID:35090095</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7vhr" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Ferroxidase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Ming | + | [[Category: Ming, T H]] |
- | [[Category: Su | + | [[Category: Su, X R]] |
- | [[Category: Wu Y]] | + | [[Category: Wu, Y]] |
+ | [[Category: Ferroxidase activity]] | ||
+ | [[Category: Metal ions binding]] | ||
+ | [[Category: Oxidoreductase]] |
Revision as of 10:28, 18 May 2022
Apostichopus japonicus ferritin
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