7sd4
From Proteopedia
(Difference between revisions)
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==SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) protein== | ==SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) protein== | ||
| - | <StructureSection load='7sd4' size='340' side='right'caption='[[7sd4]]' scene=''> | + | <StructureSection load='7sd4' size='340' side='right'caption='[[7sd4]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full | + | <table><tr><td colspan='2'>[[7sd4]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7SD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7SD4 FirstGlance]. <br> |
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7sd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7sd4 OCA], [https://pdbe.org/7sd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7sd4 RCSB], [https://www.ebi.ac.uk/pdbsum/7sd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7sd4 ProSAT]</span></td></tr> | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7sd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7sd4 OCA], [https://pdbe.org/7sd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7sd4 RCSB], [https://www.ebi.ac.uk/pdbsum/7sd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7sd4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/NCAP_SARS2 NCAP_SARS2]] Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The nucleocapsid (N) protein is one of the four structural proteins of the SARS-CoV-2 virus and plays a crucial role in viral genome organization and, hence, replication and pathogenicity. The N-terminal domain (N(NTD)) binds to the genomic RNA and thus comprises a potential target for inhibitor and vaccine development. We determined the atomic-resolution structure of crystalline N(NTD) by integrating solid-state magic angle spinning (MAS) NMR and X-ray diffraction. Our combined approach provides atomic details of protein packing interfaces as well as information about flexible regions as the N- and C-termini and the functionally important RNA binding, beta-hairpin loop. In addition, ultrafast (100 kHz) MAS (1)H-detected experiments permitted the assignment of side-chain proton chemical shifts not available by other means. The present structure offers guidance for designing therapeutic interventions against the SARS-CoV-2 infection. | ||
| + | |||
| + | Atomic-Resolution Structure of SARS-CoV-2 Nucleocapsid Protein N-Terminal Domain.,Sarkar S, Runge B, Russell RW, Movellan KT, Calero D, Zeinalilathori S, Quinn CM, Lu M, Calero G, Gronenborn AM, Polenova T J Am Chem Soc. 2022 May 31. doi: 10.1021/jacs.2c03320. PMID:35638584<ref>PMID:35638584</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7sd4" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Calero D]] | + | [[Category: Calero, D]] |
| - | [[Category: Calero G]] | + | [[Category: Calero, G]] |
| - | [[Category: Gronenborn | + | [[Category: Gronenborn, A M]] |
| - | [[Category: Lu M]] | + | [[Category: Lu, M]] |
| - | [[Category: Polenova T]] | + | [[Category: Polenova, T]] |
| - | [[Category: Quinn | + | [[Category: Quinn, C M]] |
| - | [[Category: Runge B]] | + | [[Category: Runge, B]] |
| - | [[Category: Russell | + | [[Category: Russell, R W]] |
| - | [[Category: Sarkar S]] | + | [[Category: Sarkar, S]] |
| - | [[Category: Zeinalilathori S]] | + | [[Category: Zeinalilathori, S]] |
| + | [[Category: Covid-19]] | ||
| + | [[Category: N-terminal domain]] | ||
| + | [[Category: Nucleocapsid protein]] | ||
| + | [[Category: Rna-binding domain]] | ||
| + | [[Category: Sars-cov-2]] | ||
| + | [[Category: Structural protein]] | ||
Revision as of 05:21, 15 June 2022
SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) protein
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