3rce

From Proteopedia

(Difference between revisions)

Revision as of 05:57, 15 June 2022

Bacterial oligosaccharyltransferase PglB

Structural highlights

3rce is a 2 chain structure with sequence from Atcc 35221. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:	pglB, Cla_1253 (ATCC 35221)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[PGLB_CAMLR] Oligosaccharyltransferase that catalyzes the transfer of a preassembled heptasaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains, affording a beta-linked glycan to the asparagine side chain of target proteins.^[1]

Publication Abstract from PubMed

Asparagine-linked glycosylation is a post-translational modification of proteins containing the conserved sequence motif Asn-X-Ser/Thr. The attachment of oligosaccharides is implicated in diverse processes such as protein folding and quality control, organism development or host-pathogen interactions. The reaction is catalysed by oligosaccharyltransferase (OST), a membrane protein complex located in the endoplasmic reticulum. The central, catalytic enzyme of OST is the STT3 subunit, which has homologues in bacteria and archaea. Here we report the X-ray structure of a bacterial OST, the PglB protein of Campylobacter lari, in complex with an acceptor peptide. The structure defines the fold of STT3 proteins and provides insight into glycosylation sequon recognition and amide nitrogen activation, both of which are prerequisites for the formation of the N-glycosidic linkage. We also identified and validated catalytically important, acidic amino acid residues. Our results provide the molecular basis for understanding the mechanism of N-linked glycosylation.

X-ray structure of a bacterial oligosaccharyltransferase.,Lizak C, Gerber S, Numao S, Aebi M, Locher KP Nature. 2011 Jun 15;474(7351):350-5. doi: 10.1038/nature10151. PMID:21677752^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Lizak C, Gerber S, Numao S, Aebi M, Locher KP. X-ray structure of a bacterial oligosaccharyltransferase. Nature. 2011 Jun 15;474(7351):350-5. doi: 10.1038/nature10151. PMID:21677752 doi:10.1038/nature10151
↑ Lizak C, Gerber S, Numao S, Aebi M, Locher KP. X-ray structure of a bacterial oligosaccharyltransferase. Nature. 2011 Jun 15;474(7351):350-5. doi: 10.1038/nature10151. PMID:21677752 doi:10.1038/nature10151

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3rce"

@@ Line 1: / Line 1: @@
 ==Bacterial oligosaccharyltransferase PglB==
-<StructureSection load='3rce' size='340' side='right' caption='[[3rce]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
+<StructureSection load='3rce' size='340' side='right'caption='[[3rce]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3rce]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35221 Atcc 35221]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RCE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RCE FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3rce]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35221 Atcc 35221]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RCE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RCE FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PPN:PARA-NITROPHENYLALANINE'>PPN</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pglB, Cla_1253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=201 ATCC 35221])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pglB, Cla_1253 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=201 ATCC 35221])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rce FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rce OCA], [http://pdbe.org/3rce PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3rce RCSB], [http://www.ebi.ac.uk/pdbsum/3rce PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3rce ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rce FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rce OCA], [https://pdbe.org/3rce PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rce RCSB], [https://www.ebi.ac.uk/pdbsum/3rce PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rce ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PGLB_CAMLR PGLB_CAMLR]] Oligosaccharyltransferase that catalyzes the transfer of a preassembled heptasaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains, affording a beta-linked glycan to the asparagine side chain of target proteins.<ref>PMID:21677752</ref>
+[[https://www.uniprot.org/uniprot/PGLB_CAMLR PGLB_CAMLR]] Oligosaccharyltransferase that catalyzes the transfer of a preassembled heptasaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains, affording a beta-linked glycan to the asparagine side chain of target proteins.<ref>PMID:21677752</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 25: / Line 25: @@
 </StructureSection>
 [[Category: Atcc 35221]]
+[[Category: Large Structures]]
 [[Category: Aebi, M]]
 [[Category: Gerber, S]]

3rce

From Proteopedia

Revision as of 05:57, 15 June 2022

Bacterial oligosaccharyltransferase PglB

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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