6xa0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of C-As lyase with mutation K105R with Ni(II)==
==Crystal structure of C-As lyase with mutation K105R with Ni(II)==
-
<StructureSection load='6xa0' size='340' side='right'caption='[[6xa0]]' scene=''>
+
<StructureSection load='6xa0' size='340' side='right'caption='[[6xa0]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XA0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6xa0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thecd Thecd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XA0 FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xa0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xa0 OCA], [https://pdbe.org/6xa0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xa0 RCSB], [https://www.ebi.ac.uk/pdbsum/6xa0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xa0 ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tcur_4156 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=471852 THECD])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xa0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xa0 OCA], [https://pdbe.org/6xa0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xa0 RCSB], [https://www.ebi.ac.uk/pdbsum/6xa0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xa0 ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Organoarsenicals such as monosodium methylarsenate (MSMA or MAs(V)) and roxarsone (4-hydroxyl-3-nitrophenylarsenate or Rox(V)) have been extensively used as herbicides and growth enhancers for poultry, respectively. Degradation of organoarsenicals to inorganic arsenite (As(III)) contaminates crops and drinking water. One such process is catalyzed by the bacterial enzyme ArsI, whose gene is found in many soil bacteria. ArsI is a non-heme ferrous iron (Fe(II))-dependent dioxygenase that catalyzes oxygen-dependent cleavage of the carbonarsenic (C-As) bond in trivalent organoarsenicals, degrading them to inorganic As(III). From previous crystal structures of ArsI, we predicted that a loop-gating mechanism controls the catalytic reaction. Understanding the catalytic mechanism of ArsI requires knowledge of the mechanisms of substrate binding and activation of dioxygen. Here we report new ArsI structures with bound Rox(III) and mutant enzymes with alteration of active site residues. Our results elucidate steps in the catalytic cycle of this novel dioxygenase and enhance understanding of the recycling of environmental organoarsenicals.
 +
 +
The ArsI C-As lyase: Elucidating the catalytic mechanism of degradation of organoarsenicals.,Nadar VS, Kandavelu P, Sankaran B, Rosen BP, Yoshinaga M J Inorg Biochem. 2022 Jul;232:111836. doi: 10.1016/j.jinorgbio.2022.111836. Epub , 2022 Apr 20. PMID:35487149<ref>PMID:35487149</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6xa0" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Glyoxalase 3D structures|Glyoxalase 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Kandavelu P]]
+
[[Category: Thecd]]
-
[[Category: Rosen BP]]
+
[[Category: Kandavelu, P]]
-
[[Category: Sankaran B]]
+
[[Category: Rosen, B P]]
-
[[Category: Venkadesh S]]
+
[[Category: Sankaran, B]]
-
[[Category: Yoshinaga M]]
+
[[Category: Venkadesh, S]]
 +
[[Category: Yoshinaga, M]]
 +
[[Category: C-as lyase]]
 +
[[Category: Oxidoreductase]]

Revision as of 09:50, 22 June 2022

Crystal structure of C-As lyase with mutation K105R with Ni(II)

PDB ID 6xa0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools