This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ss2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==
==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==
-
<StructureSection load='3ss2' size='340' side='right' caption='[[3ss2]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+
<StructureSection load='3ss2' size='340' side='right'caption='[[3ss2]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrfu Pyrfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrfu Pyrfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kyx|3kyx]], [[3ryg|3ryg]], [[3rz6|3rz6]], [[3rzr|3rzr]], [[3rzt|3rzt]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3kyx|3kyx]], [[3ryg|3ryg]], [[3rz6|3rz6]], [[3rzr|3rzr]], [[3rzt|3rzt]]</div></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [http://pdbe.org/3ss2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [https://pdbe.org/3ss2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
+
[[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrfu]]
[[Category: Pyrfu]]
[[Category: Blakeley, M P]]
[[Category: Blakeley, M P]]

Revision as of 08:08, 29 June 2022

Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data

PDB ID 3ss2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ss2"
Personal tools