User:Eric Martz/Sandbox 4
From Proteopedia
(Difference between revisions)
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This green link is a <jmolLink> that directly loads an uploaded script (a modified state script). | This green link is a <jmolLink> that directly loads an uploaded script (a modified state script). | ||
When the script is dropped into Jmol.jar 14.31.8 (current main version in Proteopedia) it works (3 unrecognized but harmless set commands) even though the script was written from JSmol 14.32.64. | When the script is dropped into Jmol.jar 14.31.8 (current main version in Proteopedia) it works (3 unrecognized but harmless set commands) even though the script was written from JSmol 14.32.64. | ||
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| - | When this green link is clicked, an error is reported in the JSmol Javascript Console. I do not understand what causes this error. | ||
<jmol> | <jmol> | ||
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<script> | <script> | ||
script /wiki/images/2/21/1sva-half-capsid-distance.spt; | script /wiki/images/2/21/1sva-half-capsid-distance.spt; | ||
| + | rotate y 90; | ||
spin on; | spin on; | ||
</script> | </script> | ||
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The load command in the script loads a "frozen" uploaded PDB file [[Image:1sva-revdat2009.pdb.gz]]. | The load command in the script loads a "frozen" uploaded PDB file [[Image:1sva-revdat2009.pdb.gz]]. | ||
| - | When that command is run in the Proteopedia JSmol console, the virus capsid loads correctly. | ||
Here is an extremely simplified script: | Here is an extremely simplified script: | ||
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However, when a .spt file containing those commands is dropped into JSmol, the capsid loads, but the spacefill and color commands do not execute. I don't know why they fail. | However, when a .spt file containing those commands is dropped into JSmol, the capsid loads, but the spacefill and color commands do not execute. I don't know why they fail. | ||
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| - | <!-- | ||
| - | OBSOLETE - FAILS TO LOAD: <scene name='85/859610/Half_capsid_spt_minus_props/1'>Half Capsid by Script</scene>: Scene created by dropping half-capsid-nodata.spt into JSmol after first loading 1sva. State script load command modified to | ||
| - | load "" FILTER "*.CA;biomolecule 1;bmchains;/=5"; and function _setDataState() made an empty function {} (previously it assigned distances from center to each of ~25,000 alpha carbons). | ||
| - | --> | ||
</StructureSection> | </StructureSection> | ||
Revision as of 18:28, 25 July 2022
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