User:Eric Martz/Sandbox 4

This green link is a <jmolLink> that directly loads an uploaded script (a modified state script). When the script is dropped into Jmol.jar 14.31.8 (current main version in Proteopedia) it works (3 unrecognized but harmless set commands) even though the script was written from JSmol 14.32.64.

The load command in the script loads a "frozen" uploaded PDB file Image:1sva-revdat2009.pdb.gz.

JSmol Version

The state script was generated by JSmol 14.32.64.

The load command in the script includes FILTER "*.CA;biomolecule 1;bmchains;/=5".

Filters "*.CA;biomolecule 1;" and "/=5" work in JSmol 14.31.8. Filter "bmchains" is ignored, so all copies of chain "1" are also named "1". This does not matter.

As long as the atomindex values generated in 14.31.8 match those generated in 14.32.64, the script works.

FAILS BECAUSE CAPTION CONTAINS SEMICOLON: : Scene created by dropping half-capsid-nodata.spt into JSmol after first loading 1sva. State script load command modified to load "" FILTER "*.CA;biomolecule 1;bmchains;/=5"; and function _setDataState() made an empty function {} (previously it assigned distances from center to each of ~25,000 alpha carbons).