This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3vmw
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate== | ==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate== | ||
| - | <StructureSection load='3vmw' size='340' side='right' caption='[[3vmw]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3vmw' size='340' side='right'caption='[[3vmw]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._n16-5 Bacillus sp. n16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMW FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vmv|3vmv]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vmv|3vmv]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122631 Bacillus sp. N16-5])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [https://pdbe.org/3vmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [https://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr> |
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 24: | Line 24: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bacillus sp. n16-5]] | [[Category: Bacillus sp. n16-5]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Pectate lyase]] | [[Category: Pectate lyase]] | ||
[[Category: Guo, R T]] | [[Category: Guo, R T]] | ||
Revision as of 18:53, 27 July 2022
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate
| |||||||||||
Categories: Bacillus sp. n16-5 | Large Structures | Pectate lyase | Guo, R T | Huang, C H | Ko, T P | Liu, W | Ma, Y | Xue, Y | Zhang, G | Zheng, Y | Zhou, C | Beta-helix | Lyase | Pectolytic | Polygalacturonate | Polysaccharide lyase family 1
