6xi3
From Proteopedia
(Difference between revisions)
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==Crystal structure of tetra-tandem repeat in extending region of large adhesion protein== | ==Crystal structure of tetra-tandem repeat in extending region of large adhesion protein== | ||
| - | <StructureSection load='6xi3' size='340' side='right'caption='[[6xi3]]' scene=''> | + | <StructureSection load='6xi3' size='340' side='right'caption='[[6xi3]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XI3 OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6xi3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Marhs Marhs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XI3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XI3 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MARHY3363 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1163748 MARHS])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xi3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xi3 OCA], [https://pdbe.org/6xi3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xi3 RCSB], [https://www.ebi.ac.uk/pdbsum/6xi3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xi3 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | RTX adhesins are long, multi-domain proteins present on the outer membrane of many Gram-negative bacteria. From this vantage point, adhesins use their distal ligand-binding domains for surface attachment leading to biofilm formation. To expand the reach of the ligand-binding domains, RTX adhesins maintain a central extender region of multiple tandem repeats, which makes up most of the proteins' large molecular weight. Alignments of the 10-15-kDa extender domains show low sequence identity between adhesins. Here we have produced and structurally characterized protein constructs of four tandem repeats (tetra-tandemers) from two different RTX adhesins. In comparing the tetra-tandemers to each other and already solved structures from Marinomonas primoryensis and Salmonella enterica, the extender domains fold as diverse beta-sandwich structures with widely differing calcium contents. However, all the tetra-tandemers have at least one calcium ion coordinated in the linker region between beta-sandwich domains whose role appears to be the rigidification of the extender region to help the adhesin extend its reach. | ||
| + | |||
| + | Essential role of calcium in extending RTX adhesins to their target.,Vance TDR, Ye Q, Conroy B, Davies PL J Struct Biol X. 2020 Sep 8;4:100036. doi: 10.1016/j.yjsbx.2020.100036., eCollection 2020. PMID:32984811<ref>PMID:32984811</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6xi3" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Davies | + | [[Category: Marhs]] |
| - | [[Category: Vance | + | [[Category: Davies, P L]] |
| - | [[Category: Ye Q]] | + | [[Category: Vance, T D.R]] |
| + | [[Category: Ye, Q]] | ||
| + | [[Category: Adhesion protein]] | ||
| + | [[Category: Bacterial adhesin]] | ||
| + | [[Category: Beta-sandwich domain]] | ||
| + | [[Category: Calcium-binding protein]] | ||
| + | [[Category: Ig-like domain]] | ||
| + | [[Category: Metal binding protein]] | ||
Revision as of 05:05, 10 August 2022
Crystal structure of tetra-tandem repeat in extending region of large adhesion protein
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