7vft

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==Crystal structure of rGGGC(CAG)5GUCC oligo==
==Crystal structure of rGGGC(CAG)5GUCC oligo==
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<StructureSection load='7vft' size='340' side='right'caption='[[7vft]]' scene=''>
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<StructureSection load='7vft' size='340' side='right'caption='[[7vft]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VFT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VFT FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7vft]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VFT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VFT FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vft FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vft OCA], [https://pdbe.org/7vft PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vft RCSB], [https://www.ebi.ac.uk/pdbsum/7vft PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vft ProSAT]</span></td></tr>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vft FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vft OCA], [https://pdbe.org/7vft PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vft RCSB], [https://www.ebi.ac.uk/pdbsum/7vft PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vft ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Polyglutamine (polyQ) diseases are a type of inherited neurodegenerative disorders caused by cytosine-adenine-guanine (CAG) trinucleotide expansion within the coding region of the disease-associated genes. We previously demonstrated that a pathogenic interaction between expanded CAG RNA and the nucleolin (NCL) protein triggers the nucleolar stress and neuronal cell death in polyQ diseases. However, mechanisms behind the molecular interaction remain unknown. Here, we report a 1.45 A crystal structure of the r(CAG)5 oligo that comprises a full A'-form helical turn with widened grooves. Based on this structure, we simulated a model of r(CAG)5 RNA complexed with the RNA recognition motif 2 (RRM2) of NCL and identified NCL residues that are critical for its binding to CAG RNA. Combined with in vitro and in vivo site-directed mutagenesis studies, our model reveals that CAG RNA binds to NCL sites that are not important for other cellular functions like gene expression and rRNA synthesis regulation, indicating that toxic CAG RNA interferes with NCL functions by sequestering it. Accordingly, an NCL mutant that is aberrant in CAG RNA-binding could rescue RNA-induced cytotoxicity effectively. Taken together, our study provides new molecular insights into the pathogenic mechanism of polyQ diseases mediated by NCL-CAG RNA interaction.
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Molecular insights into the interaction of CAG trinucleotide RNA repeats with nucleolin and its implication in polyglutamine diseases.,An Y, Chen ZS, Chan HYE, Ngo JCK Nucleic Acids Res. 2022 Jul 22;50(13):7655-7668. doi: 10.1093/nar/gkac532. PMID:35776134<ref>PMID:35776134</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7vft" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: An Y]]
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[[Category: An, Y]]
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[[Category: Chan HYE]]
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[[Category: Chan, H Y.E]]
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[[Category: Ngo JCK]]
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[[Category: Ngo, J C.K]]
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[[Category: Expanded cag rna]]
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[[Category: Polyq disease]]
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[[Category: Rna]]
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[[Category: Rna toxicity]]

Revision as of 05:14, 10 August 2022

Crystal structure of rGGGC(CAG)5GUCC oligo

PDB ID 7vft

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