7pcn
From Proteopedia
(Difference between revisions)
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==BurG (holo) in complex with gonyenediol (14), trigonic acid (6) and DMS: Biosynthesis of cyclopropanol rings in bacterial toxins== | ==BurG (holo) in complex with gonyenediol (14), trigonic acid (6) and DMS: Biosynthesis of cyclopropanol rings in bacterial toxins== | ||
- | <StructureSection load='7pcn' size='340' side='right'caption='[[7pcn]]' scene=''> | + | <StructureSection load='7pcn' size='340' side='right'caption='[[7pcn]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PCN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PCN FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7pcn]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PCN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PCN FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pcn OCA], [https://pdbe.org/7pcn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pcn RCSB], [https://www.ebi.ac.uk/pdbsum/7pcn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pcn ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=78I:(2R)-2-oxidanyl-2-(1-oxidanylcyclopropyl)ethanoic+acid'>78I</scene>, <scene name='pdbligand=7BI:dimethyl-[(Z)-3,4,5-tris(oxidanyl)-5-oxidanylidene-pent-3-enyl]sulfanium'>7BI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSM:(METHYLSULFANYL)METHANE'>MSM</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr> |
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6aqj|6aqj]]</div></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ketol-acid_reductoisomerase Ketol-acid reductoisomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.86 1.1.1.86] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pcn OCA], [https://pdbe.org/7pcn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pcn RCSB], [https://www.ebi.ac.uk/pdbsum/7pcn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pcn ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Bacteria of the Burkholderia pseudomallei (BP) group pose a global health threat, causing the infectious diseases melioidosis, a common cause of pneumonia and sepsis, and glanders, a contagious zoonosis. A trait of BP bacteria is a conserved gene cluster coding for the biosynthesis of polyketides (malleicyprols) with a reactive cyclopropanol unit that is critical for virulence. Enzymes building this warhead represent ideal targets for antivirulence strategies but the biochemical basis of cyclopropanol formation is unknown. Here we describe the formation of the malleicyprol warhead. We show that BurG, an unusual NAD(+)-dependent member of the ketol-acid reductoisomerase family, constructs the strained cyclopropanol ring. Biochemical assays and a suite of eight crystal structures of native and mutated BurG with bound analogues and inhibitors provide snapshots of each step of the complex reaction mechanism, involving a concealed oxidoreduction and a C-S bond cleavage. Our findings illustrate a remarkable case of neofunctionalisation, where a biocatalyst from central metabolism has been evolutionarily repurposed for warhead production in pathogens. | ||
+ | |||
+ | Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.,Trottmann F, Ishida K, Ishida-Ito M, Kries H, Groll M, Hertweck C Nat Chem. 2022 Aug;14(8):884-890. doi: 10.1038/s41557-022-01005-z. Epub 2022 Jul , 29. PMID:35906404<ref>PMID:35906404</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7pcn" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Ketol-acid reductoisomerase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Groll M]] | + | [[Category: Groll, M]] |
- | [[Category: Hertweck C]] | + | [[Category: Hertweck, C]] |
- | [[Category: Ishida K]] | + | [[Category: Ishida, K]] |
- | [[Category: Ishida M]] | + | [[Category: Ishida, M]] |
- | [[Category: Kries H]] | + | [[Category: Kries, H]] |
- | [[Category: Trottmann F]] | + | [[Category: Trottmann, F]] |
+ | [[Category: Biosynthesis]] | ||
+ | [[Category: Catalysis]] | ||
+ | [[Category: Lyase]] | ||
+ | [[Category: Natural product]] | ||
+ | [[Category: Pathogen]] | ||
+ | [[Category: Toxin]] |
Revision as of 06:37, 18 August 2022
BurG (holo) in complex with gonyenediol (14), trigonic acid (6) and DMS: Biosynthesis of cyclopropanol rings in bacterial toxins
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Categories: Ketol-acid reductoisomerase | Large Structures | Groll, M | Hertweck, C | Ishida, K | Ishida, M | Kries, H | Trottmann, F | Biosynthesis | Catalysis | Lyase | Natural product | Pathogen | Toxin