AlphaFold pLDDT and expected distance error
From Proteopedia
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<scene name='92/920232/Two_dimensional_200/1'>Residue 200</scene> | <scene name='92/920232/Two_dimensional_200/1'>Residue 200</scene> | ||
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<scene name='92/920232/Two_dimensional_400/1'>Residue 400</scene> | <scene name='92/920232/Two_dimensional_400/1'>Residue 400</scene> | ||
Revision as of 15:14, 18 August 2022
AlphaFold provides two measures of coordinate error. The residue-by-residue pLDDT value stored directly in the coordinate file, and the pairwise residue distance error stored in a separate file.
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- ↑ Mariani V, Biasini M, Barbato A, Schwede T. lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinformatics. 2013 Nov 1;29(21):2722-8. doi: 10.1093/bioinformatics/btt473., Epub 2013 Aug 27. PMID:23986568 doi:http://dx.doi.org/10.1093/bioinformatics/btt473
