Alcohol dehydrogenase 3D structures
From Proteopedia
(Difference between revisions)
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**[[3jv7]] – RrADH I – ''Rhodococcus rubber''<br /> | **[[3jv7]] – RrADH I – ''Rhodococcus rubber''<br /> | ||
**[[4w6z]] – yADH I – yeast<br /> | **[[4w6z]] – yADH I – yeast<br /> | ||
| + | **[[7kcq]] – yADH I – Cryo EM<br /> | ||
**[[4eex]] – LlADH I – ''Lactococcus lactis''<br /> | **[[4eex]] – LlADH I – ''Lactococcus lactis''<br /> | ||
**[[4eez]] – LlADH I (mutant) | **[[4eez]] – LlADH I (mutant) | ||
| Line 18: | Line 19: | ||
**[[1u3w]] - hADH I γ chain + inhibitor<br /> | **[[1u3w]] - hADH I γ chain + inhibitor<br /> | ||
**[[1ht0]] - hADH I γ chain (mutant) + NAD<br /> | **[[1ht0]] - hADH I γ chain (mutant) + NAD<br /> | ||
| + | **[[7kc2]], [[7kjy]] – yADH I + NAD – Cryo EM<br /> | ||
**[[6c49]] – ADH I + Zn – ''Acinetobacter baumannii''<br /> | **[[6c49]] – ADH I + Zn – ''Acinetobacter baumannii''<br /> | ||
| + | **[[6qhe]] – ADH + NAD – Arthrobacter<br /> | ||
*ADH I ternary complex | *ADH I ternary complex | ||
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**[[1deh]], [[1hdy]] - hADH I β chain + NAD + pyrazole derivative<br /> | **[[1deh]], [[1hdy]] - hADH I β chain + NAD + pyrazole derivative<br /> | ||
**[[1htb]] - hADH I β3 chain + NAD + pyrazole derivative<br /> | **[[1htb]] - hADH I β3 chain + NAD + pyrazole derivative<br /> | ||
| - | **[[2xaa]] – RrADH I + NAD + alcohol<br /> | ||
| - | **[[6ffx]] – RrADH I + Zn + NAD<br /> | ||
| - | **[[6ffz]], [[5o8h]], [[5o8q]], [[5o9d]], [[5o9f]], [[6fg0]], [[5od3]] – RrADH I (mutant) + Zn + NAD<br /> | ||
**[[3fx4]] – pADH I + NADP + inhibitor – pig<br /> | **[[3fx4]] – pADH I + NADP + inhibitor – pig<br /> | ||
**[[4w6z]] – yADH I + Zn + NAD derivative<br /> | **[[4w6z]] – yADH I + Zn + NAD derivative<br /> | ||
**[[5env]] – yADH I + Zn + NAD + alcohol<br /> | **[[5env]] – yADH I + Zn + NAD + alcohol<br /> | ||
| + | **[[6ffx]] – RrADH I + Zn + NAD<br /> | ||
| + | **[[6ffz]], [[5o8h]], [[5o8q]], [[5o9d]], [[5o9f]], [[6fg0]], [[5od3]] – RrADH I (mutant) + Zn + NAD<br /> | ||
*ADH II | *ADH II | ||
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**[[3cos]] - hADH II + NAD + Zn<br /> | **[[3cos]] - hADH II + NAD + Zn<br /> | ||
| - | **[[3ox4]] - ZmADH II iron-dependent + NAD<br /> | ||
**[[1e3e]] – mADH II + NADH – mouse<br /> | **[[1e3e]] – mADH II + NADH – mouse<br /> | ||
**[[1e3l]] - mADH II (mutant) + NADH<br /> | **[[1e3l]] - mADH II (mutant) + NADH<br /> | ||
**[[1e3i]] - mADH II + NADH + inhibitor<br /> | **[[1e3i]] - mADH II + NADH + inhibitor<br /> | ||
**[[5yln]] – ADH II + Zn – ''Streptococcus pneumoniae''<br /> | **[[5yln]] – ADH II + Zn – ''Streptococcus pneumoniae''<br /> | ||
| + | **[[3ox4]] - ZmADH II iron-dependent + NAD<br /> | ||
*ADH III | *ADH III | ||
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**[[1d1s]], [[1agn]] – hADH IV σ chain + NAD<br /> | **[[1d1s]], [[1agn]] – hADH IV σ chain + NAD<br /> | ||
**[[1d1t]] - hADH IV σ chain (mutant) + NAD<br /> | **[[1d1t]] - hADH IV σ chain (mutant) + NAD<br /> | ||
| - | **[[2jhf]], [[2jhg]], [[1het]], [[1heu]], [[1hf3]], [[1ee2]], [[2oxi]], [[2ohx]], [[6adh]] - hoADH IV e chain + NAD<br /> | + | **[[2jhf]], [[2jhg]], [[1het]], [[1heu]], [[1hf3]], [[1ee2]], [[2oxi]], [[2ohx]], [[6adh]], [[7udd]] - hoADH IV e chain + NAD<br /> |
**[[6nbb]] - hoADH IV e chain + NAD – Cryo EM<br /> | **[[6nbb]] - hoADH IV e chain + NAD – Cryo EM<br /> | ||
**[[1adb]], [[1adc]], [[1adf]], [[1adg]], [[7adh]], [[5vn1]] - hoADH IV e chain + NAD derivative<br /> | **[[1adb]], [[1adc]], [[1adf]], [[1adg]], [[7adh]], [[5vn1]] - hoADH IV e chain + NAD derivative<br /> | ||
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**[[3oq6]], [[1qv6]], [[1qv7]], [[1a71]], [[1axe]], [[1axg]], [[4nfh]], [[4nfs]], [[4ng5]], [[5kje]], [[5kjc]], [[5kj6]], [[5kj1]], [[5kcz]], [[5kcp]], [[5cdt]], [[5cds]], [[5cdg]], [[6o91]], [[6oa7]], [[6owm]], [[6owp]] – hoADH IV e chain (mutant) + NAD + alcohol<br /> | **[[3oq6]], [[1qv6]], [[1qv7]], [[1a71]], [[1axe]], [[1axg]], [[4nfh]], [[4nfs]], [[4ng5]], [[5kje]], [[5kjc]], [[5kj6]], [[5kj1]], [[5kcz]], [[5kcp]], [[5cdt]], [[5cds]], [[5cdg]], [[6o91]], [[6oa7]], [[6owm]], [[6owp]] – hoADH IV e chain (mutant) + NAD + alcohol<br /> | ||
| - | **[[4dwv]], [[4dxh]], [[5kjf]], [[6xt2]], [[7jqa]], [[7k35]] - hoADH IV e chain + NAD + alcohol<br /> | + | **[[4dwv]], [[4dxh]], [[5kjf]], [[6xt2]], [[7jqa]], [[7k35]], [[7ua6]], [[7uc9]], [[7uca]], [[7ucu]], [[7ude]], [[7udr]], [[7uec]], [[7uee]], [[7uef]], [[7uei]], [[7uej]], [[7uhv]], 7uhw]], [[7uhx]] - hoADH IV e chain + NAD + alcohol<br /> |
**[[1p1r]], [[1ldy]], [[1lde]] - hoADH IV e chain + NADH + formamide derivative<br /> | **[[1p1r]], [[1ldy]], [[1lde]] - hoADH IV e chain + NADH + formamide derivative<br /> | ||
**[[1n92]] - hoADH IV e chain + NAD + pyrazole derivative<br /> | **[[1n92]] - hoADH IV e chain + NAD + pyrazole derivative<br /> | ||
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**[[4bmn]] – ReADH - ''Ralstonia eutropha''<br /> | **[[4bmn]] – ReADH - ''Ralstonia eutropha''<br /> | ||
**[[4z6k]] – ADH - ''Moraxella''<br /> | **[[4z6k]] – ADH - ''Moraxella''<br /> | ||
| + | **[[7cyi]] – ADH – ''Artemisia annua''<br /> | ||
*ADH binary complex | *ADH binary complex | ||
| + | **[[1agn]] – hADH (sigma) +NAD<br /> | ||
| + | **[[1cdo]] – ADH + NAD - cod<br /> | ||
**[[3l77]], [[3tn7]] – ADH short-chain + NADP – ''Thermococcus sibiricus''<br /> | **[[3l77]], [[3tn7]] – ADH short-chain + NADP – ''Thermococcus sibiricus''<br /> | ||
**[[1h2b]] – ADH + NAD – ''Aeropyrum pernix''<br /> | **[[1h2b]] – ADH + NAD – ''Aeropyrum pernix''<br /> | ||
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**[[3ip1]] – TmADH + Cd<br /> | **[[3ip1]] – TmADH + Cd<br /> | ||
**[[1b16]], [[1b14]], [[1b15]] - SlADH + NAD derivative<br /> | **[[1b16]], [[1b14]], [[1b15]] - SlADH + NAD derivative<br /> | ||
| - | **[[1cdo]] – ADH + NAD - cod<br /> | ||
| - | **[[1rhc]] – ADH F420-dependent +F420-acetone – ''Methanoculleus thermophilus''<br /> | ||
| - | **[[1agn]] – hADH (sigma) +NAD<br /> | ||
**[[3pii]] – GsADH + butyramide<br /> | **[[3pii]] – GsADH + butyramide<br /> | ||
**[[3rj5]], [[3rj9]] – SlADH (mutant) + NAD<br /> | **[[3rj5]], [[3rj9]] – SlADH (mutant) + NAD<br /> | ||
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*ADH ternary complex | *ADH ternary complex | ||
| + | **[[3cv7]] – pADH + NAD + NAP<br /> | ||
**[[1mg5]] – ADH + NADH + acetate – ''Drosophila melanogaster''<br /> | **[[1mg5]] – ADH + NADH + acetate – ''Drosophila melanogaster''<br /> | ||
**[[1r37]] – SsADH + NAD + alcohol<br /> | **[[1r37]] – SsADH + NAD + alcohol<br /> | ||
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**[[1b2l]] - SlADH + NAD + cyclohexanone<br /> | **[[1b2l]] - SlADH + NAD + cyclohexanone<br /> | ||
**[[1llu]] - ADH + NAD + alcohol – ''Pseudomonas aeruginosa''<br /> | **[[1llu]] - ADH + NAD + alcohol – ''Pseudomonas aeruginosa''<br /> | ||
| - | **[[3cv7]] – pADH + NAD + NAP<br /> | ||
**[[3rf7]] – SoADH + NAD + Fe + Ni<br /> | **[[3rf7]] – SoADH + NAD + Fe + Ni<br /> | ||
**[[3s2e]] – ReADH + NAD + Zn<br /> | **[[3s2e]] – ReADH + NAD + Zn<br /> | ||
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**[[4gac]] - mADH<br /> | **[[4gac]] - mADH<br /> | ||
| - | **[[4hfj]] – toADH – tobacco | + | **[[4hfj]] – toADH – tobacco<br /> |
| - | + | ||
| - | + | ||
**[[2nvb]] - TbADH (mutant) – ''Thermoanaerobacter brockii''<br /> | **[[2nvb]] - TbADH (mutant) – ''Thermoanaerobacter brockii''<br /> | ||
**[[3ftn]], [[3fpc]], [[3fpl]], [[3fsr]] – ADH chimera<br /> | **[[3ftn]], [[3fpc]], [[3fpl]], [[3fsr]] – ADH chimera<br /> | ||
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*NADP-dependent ADH complex | *NADP-dependent ADH complex | ||
| - | **[[1kev]] – CbADH + NADPH<br /> | ||
| - | **[[1bxz]] – CbADH catalytic domain + alcohol<br /> | ||
**[[1ykf]] – TbADH + NADP<br /> | **[[1ykf]] – TbADH + NADP<br /> | ||
**[[3h4g]] – pADH + NADP<br /> | **[[3h4g]] – pADH + NADP<br /> | ||
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**[[5yvm]] – bspADH + Mn + NADP derivative – brine sea pool<br /> | **[[5yvm]] – bspADH + Mn + NADP derivative – brine sea pool<br /> | ||
**[[5yvr]], [[5yvs]] – bspADH (mutant) + Mn + NADP <br /> | **[[5yvr]], [[5yvs]] – bspADH (mutant) + Mn + NADP <br /> | ||
| - | **[[5z2x]] – ADH + NADP – ''Kluyveromyces polyspora''<br /> | + | **[[5z2x]], [[7c3v]] – ADH + NADP – ''Kluyveromyces polyspora''<br /> |
**[[7utc]] – TeADH + DMSO + NADP + Zn – ''Thermoanaerobacter ethanolicus''<br /> | **[[7utc]] – TeADH + DMSO + NADP + Zn – ''Thermoanaerobacter ethanolicus''<br /> | ||
| - | **[[7jns]], [[7uut]] – TeADH (mutant) + NADP + Zn <br /> | ||
*R-specific ADH | *R-specific ADH | ||
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**[[4cvc]], [[4cvb]] – ADH + Zn + PQQ + propanoate – ''Pseudogluconobacter saccharoketogenes''<br /> | **[[4cvc]], [[4cvb]] – ADH + Zn + PQQ + propanoate – ''Pseudogluconobacter saccharoketogenes''<br /> | ||
| + | |||
| + | *Secondary ADH | ||
| + | |||
| + | **[[7utc]] - TpSADH + NADP – ''Thermoanaerobacter pseudethanolicus''<br /> | ||
| + | **[[7uut]], [[7ux4]] – TpSADH (mutant) + NADP + alcohol<br /> | ||
| + | **[[6kq9]], [[6kqb]] - SADH – ''Micrococcus luteus''<br /> | ||
| + | **[[1rhc]] – SADH +F420-acetone –'' Methanoculleus thermophilus''<br /> | ||
| + | **[[7jnq]] – TeSADH + DMSO + NADP + Zn – ''Thermoanaerobacter ethanolicus''<br /> | ||
| + | **[[7jns]], [[7jnu]] – TeSADH (mutant) + NADP + Zn <br /> | ||
| + | **[[1ped]] - CbSADH – ''Clostridium beijerinckii''<br /> | ||
| + | **[[2b83]], [[1jqb]] – CbSADH (mutant)<br /> | ||
| + | **[[1kev]] – CbSADH + NADPH<br /> | ||
| + | **[[1bxz]] – CbSADH catalytic domain + alcohol<br /> | ||
| + | **[[2xaa]] – RrSADH I + NAD + alcohol<br /> | ||
*Hydroxyacyl-CoA dehydrogenase (HADH) | *Hydroxyacyl-CoA dehydrogenase (HADH) | ||
Revision as of 07:07, 29 August 2022
3D Structures of Alcohol dehydrogenase
Updated on 29-August-2022
