7e5j
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum== | ==Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum== | ||
- | <StructureSection load='7e5j' size='340' side='right'caption='[[7e5j]]' scene=''> | + | <StructureSection load='7e5j' size='340' side='right'caption='[[7e5j]], [[Resolution|resolution]] 1.71Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E5J FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7e5j]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E5J FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e5j OCA], [https://pdbe.org/7e5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e5j RCSB], [https://www.ebi.ac.uk/pdbsum/7e5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e5j ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> |
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e5j OCA], [https://pdbe.org/7e5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e5j RCSB], [https://www.ebi.ac.uk/pdbsum/7e5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e5j ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | beta-Glucosidases (Bgls) convert cellobiose and other soluble cello-oligomers into glucose and play important roles in fundamental biological processes, providing energy sources in living organisms. Bgls are essential terminal enzymes of cellulose degradation systems and attractive targets for lignocellulose-based biotechnological applications. Characterization of novel Bgls is important for broadening our knowledge of this enzyme class and can provide insights into its further applications. In this study, we report the biochemical and structural analysis of a Bgl from the hemicellulose-degrading thermophilic anaerobe Thermoanaerobacterium saccharolyticum (TsaBgl). TsaBgl exhibited its maximum hydrolase activity on p-nitrophenyl-beta-d-glucopyranoside at pH 6.0 and 55 degrees C. The crystal structure of TsaBgl showed a single (beta/alpha)8 TIM-barrel fold, and a beta8-alpha14 loop, which is located around the substrate-binding pocket entrance, showing a unique conformation compared with other structurally known Bgls. A Tris molecule inhibited enzyme activity and was bound to the active site of TsaBgl coordinated by the catalytic residues Glu163 (proton donor) and Glu351 (nucleophile). Titration experiments showed that TsaBgl belongs to the glucose-tolerant Bgl family. The gatekeeper site of TsaBgl is similar to those of other glucose-tolerant Bgls, whereas Trp323 and Leu170, which are involved in glucose tolerance, show a unique configuration. Our results therefore improve our knowledge about the Tris-mediated inhibition and glucose tolerance of Bgl family members, which is essential for their industrial application. | ||
+ | |||
+ | Biochemical and Structural Analysis of a Glucose-Tolerant beta-Glucosidase from the Hemicellulose-Degrading Thermoanaerobacterium saccharolyticum.,Kim IJ, Bornscheuer UT, Nam KH Molecules. 2022 Jan 4;27(1). pii: molecules27010290. doi:, 10.3390/molecules27010290. PMID:35011521<ref>PMID:35011521</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7e5j" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Beta-glucosidase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Nam | + | [[Category: Nam, K H]] |
+ | [[Category: Glucosidase]] | ||
+ | [[Category: Hydrolase]] | ||
+ | [[Category: Native]] | ||
+ | [[Category: Thermoanaerobacterium saccharolyticum]] | ||
+ | [[Category: Tri]] |
Revision as of 06:41, 31 August 2022
Crystal structure of beta-glucosidase from Thermoanaerobacterium saccharolyticum
|