3x0y

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==Crystal structure of FMN-bound DszC from Rhodococcus erythropolis D-1==
==Crystal structure of FMN-bound DszC from Rhodococcus erythropolis D-1==
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<StructureSection load='3x0y' size='340' side='right'caption='[[3x0y]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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<StructureSection load='3x0y' size='340' side='right'caption='[[3x0y]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3x0y]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0Y FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0Y FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0y OCA], [https://pdbe.org/3x0y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0y RCSB], [https://www.ebi.ac.uk/pdbsum/3x0y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0y ProSAT]</span></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3x0x|3x0x]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0y OCA], [https://pdbe.org/3x0y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0y RCSB], [https://www.ebi.ac.uk/pdbsum/3x0y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0y ProSAT]</span></td></tr>
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</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The release of SO2 from petroleum products derived from crude oil, which contains sulfur compounds such as dibenzothiophene (DBT), leads to air pollution. The '4S' metabolic pathway catalyzes the sequential conversion of DBT to 2-hydroxybiphenyl via three enzymes encoded by the dsz operon in several bacterial species. DszC (DBT monooxygenase), from Rhodococcus erythropolis D-1 is involved in the first two steps of the '4S' pathway. Here, we determined the first crystal structure of FMN-bound DszC, and found that two distinct conformations occur in the loop region (residues 131-142) adjacent to the active site. On the basis of the DszC-FMN structure and the previously reported apo structures of DszC homologs, the binding site for DBT and DBT sulfoxide is proposed. DATABASE: The atomic coordinates and structure factors for apo-DszC (PDB code: 3X0X) and DszC-FMN (PDB code: 3X0Y) have been deposited in the Protein Data Bank (http://www.rcsb.org).
 
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Crystal structures of apo-DszC and FMN-bound DszC from Rhodococcus erythropolis D-1.,Guan LJ, Lee WC, Wang S, Ohshiro T, Izumi Y, Ohtsuka J, Tanokura M FEBS J. 2015 Jan 28. doi: 10.1111/febs.13216. PMID:25627402<ref>PMID:25627402</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3x0y" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Guan, L J]]
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[[Category: Guan LJ]]
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[[Category: Lee, W C]]
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[[Category: Lee WC]]
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[[Category: Ohtsuka, J]]
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[[Category: Ohtsuka J]]
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[[Category: Tanokura, M]]
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[[Category: Tanokura M]]
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[[Category: Wang, S P]]
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[[Category: Wang SP]]
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[[Category: Acyl-coa dehydrogenase domain]]
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[[Category: Dbt monooxygenase]]
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[[Category: Desulfurization]]
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[[Category: Fmn-dependent]]
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[[Category: Oxidoreductase]]
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Revision as of 10:41, 31 August 2022

Crystal structure of FMN-bound DszC from Rhodococcus erythropolis D-1

PDB ID 3x0y

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