4bxw
From Proteopedia
(Difference between revisions)
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<StructureSection load='4bxw' size='340' side='right'caption='[[4bxw]], [[Resolution|resolution]] 2.71Å' scene=''> | <StructureSection load='4bxw' size='340' side='right'caption='[[4bxw]], [[Resolution|resolution]] 2.71Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[4bxw]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4bxw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Pseudonaja_textilis Pseudonaja textilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BXW FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0GJ:L-ALPHA-GLUTAMYL-N-{(1S)-4-{[AMINO(IMINIO)METHYL]AMINO}-1-[(1S)-2-CHLORO-1-HYDROXYETHYL]BUTYL}GLYCINAMIDE'>0GJ</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0GJ:L-ALPHA-GLUTAMYL-N-{(1S)-4-{[AMINO(IMINIO)METHYL]AMINO}-1-[(1S)-2-CHLORO-1-HYDROXYETHYL]BUTYL}GLYCINAMIDE'>0GJ</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bxw OCA], [https://pdbe.org/4bxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bxw RCSB], [https://www.ebi.ac.uk/pdbsum/4bxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bxw ProSAT]</span></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
- | + | == Function == | |
- | = | + | [[https://www.uniprot.org/uniprot/FAXC_PSETE FAXC_PSETE]] Snake prothrombin activator that attacks the hemostatic system of prey. This non-catalytic subunit is functionally similar to blood coagulation factor V (PubMed:12362232, PubMed:23869089). It serves as a critical cofactor for the prothrombinase activity of the catalytic subunit, which is similar to the blood coagulation factor X (PubMed:12362232, PubMed:23869089). The complex converts prothrombin to thrombin by sequential cleavage at two positions, Arg-320 followed by Arg-271 (PubMed:23869089). Cleavage at Arg-320 produces an active intermediate known as meizothrombin (PubMed:23869089). Meizothrombin is the 'second' substrate for prothrombinase, and it docks in an altered manner to present the second cleavage site (271) (PubMed:23869089). Cleavage at Arg-271 releases active thrombin from its pro-fragment (PubMed:23869089). This order of events is reversed if the protease component of prothrombinase is used on its own, suggesting that the 271 site is inherently more accessible to proteolysis (PubMed:23869089). The complex converts prothrombin to thrombin in presence but also in the absence of membrane (PubMed:23869089).<ref>PMID:12362232</ref> <ref>PMID:23869089</ref> |
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==See Also== | ==See Also== | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Escherichia coli]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Adams | + | [[Category: Pseudonaja textilis]] |
- | [[Category: Camire | + | [[Category: Adams TE]] |
- | [[Category: Huntington | + | [[Category: Camire RM]] |
- | [[Category: Johnson | + | [[Category: Huntington JA]] |
- | [[Category: Krishnaswamy | + | [[Category: Johnson DJD]] |
- | [[Category: Lechtenberg | + | [[Category: Krishnaswamy S]] |
- | [[Category: Murray-Rust | + | [[Category: Lechtenberg BC]] |
- | + | [[Category: Murray-Rust TA]] | |
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Revision as of 17:15, 7 September 2022
Crystal Structure of the Prothrombinase Complex from the Venom of Pseudonaja Textilis
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