|
|
| Line 3: |
Line 3: |
| | <StructureSection load='4d0y' size='340' side='right'caption='[[4d0y]], [[Resolution|resolution]] 2.00Å' scene=''> | | <StructureSection load='4d0y' size='340' side='right'caption='[[4d0y]], [[Resolution|resolution]] 2.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4d0y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strp2 Strp2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D0Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D0Y FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4d0y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_D39 Streptococcus pneumoniae D39]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D0Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D0Y FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Muramoyltetrapeptide_carboxypeptidase Muramoyltetrapeptide carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.17.13 3.4.17.13] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d0y OCA], [https://pdbe.org/4d0y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d0y RCSB], [https://www.ebi.ac.uk/pdbsum/4d0y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d0y ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d0y OCA], [http://pdbe.org/4d0y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d0y RCSB], [http://www.ebi.ac.uk/pdbsum/4d0y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4d0y ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [[https://www.uniprot.org/uniprot/A0A0H2ZP28_STRP2 A0A0H2ZP28_STRP2]] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 22: |
Line 23: |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Muramoyltetrapeptide carboxypeptidase]] | + | [[Category: Streptococcus pneumoniae D39]] |
| - | [[Category: Strp2]]
| + | [[Category: Gutierrez-Fernandez J]] |
| - | [[Category: Gutierrez-Fernandez, J]] | + | [[Category: Hermoso JA]] |
| - | [[Category: Hermoso, J A]] | + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: L-d-carboxipeptidase]]
| + | |
| - | [[Category: Pneumococcus]]
| + | |
| Structural highlights
Function
[A0A0H2ZP28_STRP2]
Publication Abstract from PubMed
Bacterial cell wall hydrolases are essential for peptidoglycan turnover and crucial to preserve cell shape. The d,d-carboxypeptidase DacA and l,d-carboxypeptidase DacB of Streptococcus pneumoniae function in a sequential manner. Here, we determined the structure of the surface-exposed lipoprotein DacB. The crystal structure of DacB, radically different to that of DacA, contains a mononuclear Zn2+ catalytic center located in the middle of a large and fully exposed groove. Two different conformations were found presenting a different arrangement of the active site topology. The critical residues for catalysis and substrate specificity were identified. Loss-of-function of DacA and DacB altered the cell shape and this was consistent with a modified peptidoglycan peptide composition in dac-mutants. Contrary, an lgt-mutant lacking lipoprotein diacylglyceryl transferase activity required for proper lipoprotein maturation retained l,d-carboxypeptidase activity and showed an intact murein sacculus. In addition we demonstrated pathophysiological effects of disabled DacA or DacB activities. Real-time bioimaging of intranasal infected mice indicated a substantial attenuation of DeltadacB and DeltadacADeltadacB pneumococci, while DeltadacA had no significant effect. In addition, uptake of these mutants by professional phagocytes was enhanced, while the adherence to lung epithelial cells was decreased. Thus, structural and functional studies suggest DacA and DacB as optimal drug targets.
Structure of the pneumococcal l,d-carboxypeptidase DacB and pathophysiological effects of disabled cell wall hydrolases DacA and DacB.,Abdullah MR, Gutierrez-Fernandez J, Pribyl T, Gisch N, Saleh M, Rohde M, Petruschka L, Burchhardt G, Schwudke D, Hermoso JA, Hammerschmidt S Mol Microbiol. 2014 Jul 24. doi: 10.1111/mmi.12729. PMID:25060741[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Abdullah MR, Gutierrez-Fernandez J, Pribyl T, Gisch N, Saleh M, Rohde M, Petruschka L, Burchhardt G, Schwudke D, Hermoso JA, Hammerschmidt S. Structure of the pneumococcal l,d-carboxypeptidase DacB and pathophysiological effects of disabled cell wall hydrolases DacA and DacB. Mol Microbiol. 2014 Jul 24. doi: 10.1111/mmi.12729. PMID:25060741 doi:http://dx.doi.org/10.1111/mmi.12729
|