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| | <StructureSection load='1sdo' size='340' side='right'caption='[[1sdo]], [[Resolution|resolution]] 1.85Å' scene=''> | | <StructureSection load='1sdo' size='340' side='right'caption='[[1sdo]], [[Resolution|resolution]] 1.85Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1sdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1SDO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1sdo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SDO FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSTYIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sdo OCA], [https://pdbe.org/1sdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sdo RCSB], [https://www.ebi.ac.uk/pdbsum/1sdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sdo ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1sdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sdo OCA], [http://pdbe.org/1sdo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1sdo RCSB], [http://www.ebi.ac.uk/pdbsum/1sdo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1sdo ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [[https://www.uniprot.org/uniprot/Q84AF2_GEOSE Q84AF2_GEOSE]] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 12980]] | + | [[Category: Geobacillus stearothermophilus]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Type II site-specific deoxyribonuclease]]
| + | [[Category: Aggarwal AK]] |
| - | [[Category: Aggarwal, A K]] | + | [[Category: Edwards TA]] |
| - | [[Category: Edwards, T A]] | + | [[Category: Escalante CR]] |
| - | [[Category: Escalante, C R]] | + | [[Category: Samuelson JC]] |
| - | [[Category: Samuelson, J C]] | + | [[Category: Townson SA]] |
| - | [[Category: Townson, S A]] | + | [[Category: Vanamee ES]] |
| - | [[Category: Vanamee, E S]] | + | [[Category: Xu SY]] |
| - | [[Category: Xu, S Y]] | + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Restriction endonuclease]]
| + | |
| Structural highlights
Function
[Q84AF2_GEOSE]
Publication Abstract from PubMed
We report here the structure of BstYI, an "intermediate" type II restriction endonuclease with overlapping sequence specificities to BamHI and BglII. BstYI, a thermophilic endonuclease, recognizes and cleaves the degenerate hexanucleotide sequence 5'-RGATCY-3' (where R=A or G and Y=C or T), cleaving DNA after the 5'-R on each strand to produce four-base (5') staggered ends. The crystal structure of free BstYI was solved at 1.85A resolution by multi-wavelength anomalous dispersion (MAD) phasing. Comparison with BamHI and BglII reveals a strong structural consensus between all three enzymes mapping to the alpha/beta core domain and residues involved in catalysis. Unexpectedly, BstYI also contains an additional "arm" substructure outside of the core protein, which enables the enzyme to adopt a more compact, intertwined dimer structure compared with BamHI and BglII. This arm substructure may underlie the thermostability of BstYI. We identify putative DNA recognition residues and speculate as to how this enzyme achieves a "relaxed" DNA specificity.
Crystal structure of BstYI at 1.85A resolution: a thermophilic restriction endonuclease with overlapping specificities to BamHI and BglII.,Townson SA, Samuelson JC, Vanamee ES, Edwards TA, Escalante CR, Xu SY, Aggarwal AK J Mol Biol. 2004 May 7;338(4):725-33. PMID:15099740[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Townson SA, Samuelson JC, Vanamee ES, Edwards TA, Escalante CR, Xu SY, Aggarwal AK. Crystal structure of BstYI at 1.85A resolution: a thermophilic restriction endonuclease with overlapping specificities to BamHI and BglII. J Mol Biol. 2004 May 7;338(4):725-33. PMID:15099740 doi:10.1016/j.jmb.2004.02.074
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