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4df8
From Proteopedia
(Difference between revisions)
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==Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with aminopentinyl-7-deaza-2-dATP== | ==Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with aminopentinyl-7-deaza-2-dATP== | ||
| - | <StructureSection load='4df8' size='340' side='right' caption='[[4df8]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='4df8' size='340' side='right'caption='[[4df8]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4df8]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4df8]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DF8 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0L4:5-(5-AMINOPENT-1-YN-1-YL)-7-{2-DEOXY-5-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE'>0L4</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0L4:5-(5-AMINOPENT-1-YN-1-YL)-7-{2-DEOXY-5-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE'>0L4</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4df8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4df8 OCA], [https://pdbe.org/4df8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4df8 RCSB], [https://www.ebi.ac.uk/pdbsum/4df8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4df8 ProSAT]</span></td></tr> | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 18: | ||
</div> | </div> | ||
<div class="pdbe-citations 4df8" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4df8" style="background-color:#fffaf0;"></div> | ||
| - | |||
| - | ==See Also== | ||
| - | *[[DNA polymerase|DNA polymerase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Thermus aquaticus]] |
| - | [[Category: Baccaro | + | [[Category: Baccaro A]] |
| - | [[Category: Bergen | + | [[Category: Bergen K]] |
| - | [[Category: Diederichs | + | [[Category: Diederichs K]] |
| - | [[Category: Marx | + | [[Category: Marx A]] |
| - | [[Category: Steck | + | [[Category: Steck A]] |
| - | [[Category: Struett | + | [[Category: Struett S]] |
| - | [[Category: Welte | + | [[Category: Welte W]] |
| - | + | ||
| - | + | ||
Revision as of 08:15, 21 September 2022
Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with aminopentinyl-7-deaza-2-dATP
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Categories: Large Structures | Thermus aquaticus | Baccaro A | Bergen K | Diederichs K | Marx A | Steck A | Struett S | Welte W
