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| ==Crystal structure of NavRh, a voltage-gated sodium channel== | | ==Crystal structure of NavRh, a voltage-gated sodium channel== |
- | <StructureSection load='4dxw' size='340' side='right' caption='[[4dxw]], [[Resolution|resolution]] 3.05Å' scene=''> | + | <StructureSection load='4dxw' size='340' side='right'caption='[[4dxw]], [[Resolution|resolution]] 3.05Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4dxw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Alpha_proteobacterium_himb114 Alpha proteobacterium himb114]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DXW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DXW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4dxw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Alpha_proteobacterium_HIMB114 Alpha proteobacterium HIMB114]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DXW FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HIMB114_0051, HIMB114_1443 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=684719 alpha proteobacterium HIMB114])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dxw OCA], [https://pdbe.org/4dxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dxw RCSB], [https://www.ebi.ac.uk/pdbsum/4dxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dxw ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dxw OCA], [http://pdbe.org/4dxw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dxw RCSB], [http://www.ebi.ac.uk/pdbsum/4dxw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dxw ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [[https://www.uniprot.org/uniprot/D0RMU8_9PROT D0RMU8_9PROT]] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Alpha proteobacterium himb114]] | + | [[Category: Alpha proteobacterium HIMB114]] |
- | [[Category: Ren, W L]] | + | [[Category: Large Structures]] |
- | [[Category: Wang, J W]] | + | [[Category: Ren WL]] |
- | [[Category: Yan, C Y]] | + | [[Category: Wang JW]] |
- | [[Category: Yan, N]] | + | [[Category: Yan CY]] |
- | [[Category: Zhang, X]] | + | [[Category: Yan N]] |
- | [[Category: Sodium selective]] | + | [[Category: Zhang X]] |
- | [[Category: Tetrameric]]
| + | |
- | [[Category: Transport protein]]
| + | |
- | [[Category: Voltage-gated ion channel]]
| + | |
- | [[Category: Voltage-gated sodium channel]]
| + | |
| Structural highlights
Function
[D0RMU8_9PROT]
Publication Abstract from PubMed
Voltage-gated sodium (Na(v)) channels are essential for the rapid depolarization of nerve and muscle, and are important drug targets. Determination of the structures of Na(v) channels will shed light on ion channel mechanisms and facilitate potential clinical applications. A family of bacterial Na(v) channels, exemplified by the Na(+)-selective channel of bacteria (NaChBac), provides a useful model system for structure-function analysis. Here we report the crystal structure of Na(v)Rh, a NaChBac orthologue from the marine alphaproteobacterium HIMB114 (Rickettsiales sp. HIMB114; denoted Rh), at 3.05 A resolution. The channel comprises an asymmetric tetramer. The carbonyl oxygen atoms of Thr 178 and Leu 179 constitute an inner site within the selectivity filter where a hydrated Ca(2+) resides in the crystal structure. The outer mouth of the Na(+) selectivity filter, defined by Ser 181 and Glu 183, is closed, as is the activation gate at the intracellular side of the pore. The voltage sensors adopt a depolarized conformation in which all the gating charges are exposed to the extracellular environment. We propose that Na(v)Rh is in an 'inactivated' conformation. Comparison of Na(v)Rh with Na(v)Ab reveals considerable conformational rearrangements that may underlie the electromechanical coupling mechanism of voltage-gated channels.
Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel.,Zhang X, Ren W, DeCaen P, Yan C, Tao X, Tang L, Wang J, Hasegawa K, Kumasaka T, He J, Wang J, Clapham DE, Yan N Nature. 2012 May 20;486(7401):130-4. doi: 10.1038/nature11054. PMID:22678295[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhang X, Ren W, DeCaen P, Yan C, Tao X, Tang L, Wang J, Hasegawa K, Kumasaka T, He J, Wang J, Clapham DE, Yan N. Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel. Nature. 2012 May 20;486(7401):130-4. doi: 10.1038/nature11054. PMID:22678295 doi:10.1038/nature11054
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