7qf2
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==Structure of miniSOG reconstituted with riboflavin as a cofactor== | ==Structure of miniSOG reconstituted with riboflavin as a cofactor== | ||
- | <StructureSection load='7qf2' size='340' side='right'caption='[[7qf2]]' scene=''> | + | <StructureSection load='7qf2' size='340' side='right'caption='[[7qf2]], [[Resolution|resolution]] 1.07Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QF2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QF2 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7qf2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QF2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QF2 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qf2 OCA], [https://pdbe.org/7qf2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qf2 RCSB], [https://www.ebi.ac.uk/pdbsum/7qf2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qf2 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qf2 OCA], [https://pdbe.org/7qf2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qf2 RCSB], [https://www.ebi.ac.uk/pdbsum/7qf2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qf2 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | miniSOG, developed as the first fully genetically encoded singlet oxygen photosensitiser, has found various applications in cell imaging and functional studies. Yet, miniSOG has suboptimal properties, including a low yield of singlet oxygen generation, which can nevertheless be improved tenfold upon blue light irradiation. In a previous study, we showed that this improvement was due to the photolysis of the miniSOG chromophore, flavin mononucleotide (FMN), into lumichrome, with concomitant removal of the phosphoribityl tail, thereby improving oxygen access to the alloxazine ring. We thus reasoned that a chromophore with a shorter tail would readily improve the photosensitizing properties of miniSOG. In this work, we show that the replacement of FMN by riboflavin (RF), which lacks the bulky phosphate group, significantly improves the singlet oxygen quantum yield (PhiDelta). We then proceeded to mutagenize the residues stabilizing the phosphate group of FMN to alter the chromophore specificity. We identified miniSOG-R57Q as a flavoprotein that selectively binds RF in cellulo, with a modestly improved PhiDelta. Our results show that it is possible to modify the flavin specificity of a given flavoprotein, thus providing a new option to tune its photophysical properties, including those leading to photosensitization. We also determined the structure of miniSOG-Q103L, a mutant with a much increased PhiDelta, which allowed us to postulate the existence of another access channel to FMN for molecular oxygen. | ||
+ | |||
+ | Riboflavin-binding proteins for singlet oxygen production.,Lafaye C, Aumonier S, Torra J, Signor L, von Stetten D, Noirclerc-Savoye M, Shu X, Ruiz-Gonzalez R, Gotthard G, Royant A, Nonell S Photochem Photobiol Sci. 2022 Jan 18. pii: 10.1007/s43630-021-00156-1. doi:, 10.1007/s43630-021-00156-1. PMID:35041199<ref>PMID:35041199</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7qf2" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Arabidopsis thaliana]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Aumonier S]] | [[Category: Aumonier S]] |
Revision as of 06:27, 28 September 2022
Structure of miniSOG reconstituted with riboflavin as a cofactor
|