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4e3s

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==RB69 DNA Polymerase Ternary Complex with dQTP Opposite dT==
==RB69 DNA Polymerase Ternary Complex with dQTP Opposite dT==
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<StructureSection load='4e3s' size='340' side='right' caption='[[4e3s]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
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<StructureSection load='4e3s' size='340' side='right'caption='[[4e3s]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4e3s]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpr69 Bpr69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E3S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4E3S FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4e3s]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E3S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E3S FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=QTP:3-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-7-METHYL-3H-IMIDAZO[4,5-B]PYRIDINE'>QTP</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=QTP:3-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-7-METHYL-3H-IMIDAZO[4,5-B]PYRIDINE'>QTP</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e3s OCA], [https://pdbe.org/4e3s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e3s RCSB], [https://www.ebi.ac.uk/pdbsum/4e3s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e3s ProSAT]</span></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dtj|4dtj]], [[4dtm|4dtm]], [[4dtn|4dtn]], [[4dto|4dto]], [[4dtp|4dtp]], [[4dtr|4dtr]], [[4dts|4dts]], [[4dtu|4dtu]], [[4du3|4du3]], [[4du4|4du4]], [[4dtx|4dtx]], [[4du1|4du1]], [[4eav|4eav]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">43 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12353 BPR69])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4e3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e3s OCA], [http://pdbe.org/4e3s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4e3s RCSB], [http://www.ebi.ac.uk/pdbsum/4e3s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4e3s ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
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[[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4e3s" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4e3s" style="background-color:#fffaf0;"></div>
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==See Also==
 
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*[[DNA polymerase|DNA polymerase]]
 
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bpr69]]
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[[Category: Escherichia phage RB69]]
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[[Category: DNA-directed DNA polymerase]]
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[[Category: Large Structures]]
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[[Category: Konigsberg, W H]]
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[[Category: Konigsberg WH]]
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[[Category: Wang, J]]
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[[Category: Wang J]]
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[[Category: Xia, S]]
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[[Category: Xia S]]
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[[Category: Dqtp]]
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[[Category: Rb69pol]]
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[[Category: Transferase-dna complex]]
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Revision as of 06:47, 28 September 2022

RB69 DNA Polymerase Ternary Complex with dQTP Opposite dT

PDB ID 4e3s

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