This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4epe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:21, 28 September 2022) (edit) (undo)
 
Line 1: Line 1:
==Final Urease Structure for Radiation Damage Experiment at 300 K==
==Final Urease Structure for Radiation Damage Experiment at 300 K==
-
<StructureSection load='4epe' size='340' side='right' caption='[[4epe]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='4epe' size='340' side='right'caption='[[4epe]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4epe]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"aerobacter_aerogenes"_hormaeche_and_edwards_1958 "aerobacter aerogenes" hormaeche and edwards 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EPE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EPE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4epe]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EPE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4epe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4epe OCA], [https://pdbe.org/4epe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4epe RCSB], [https://www.ebi.ac.uk/pdbsum/4epe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4epe ProSAT]</span></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ep8|4ep8]], [[4epb|4epb]], [[4epd|4epd]]</td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ureC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=548 "Aerobacter aerogenes" Hormaeche and Edwards 1958]), ureB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=548 "Aerobacter aerogenes" Hormaeche and Edwards 1958]), ureA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=548 "Aerobacter aerogenes" Hormaeche and Edwards 1958])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Urease Urease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.5 3.5.1.5] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4epe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4epe OCA], [http://pdbe.org/4epe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4epe RCSB], [http://www.ebi.ac.uk/pdbsum/4epe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4epe ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/URE1_KLEAE URE1_KLEAE]]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 20:
==See Also==
==See Also==
-
*[[Urease|Urease]]
+
*[[Urease 3D structures|Urease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aerobacter aerogenes hormaeche and edwards 1958]]
+
[[Category: Klebsiella aerogenes]]
-
[[Category: Urease]]
+
[[Category: Large Structures]]
-
[[Category: Badeau, R]]
+
[[Category: Badeau R]]
-
[[Category: Hopkins, J B]]
+
[[Category: Hopkins JB]]
-
[[Category: Thorne, R E]]
+
[[Category: Thorne RE]]
-
[[Category: Warkentin, M]]
+
[[Category: Warkentin M]]
-
[[Category: Alpha-beta barrel]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nickel metalloenzyme]]
+
-
[[Category: Radiation damage]]
+

Current revision

Final Urease Structure for Radiation Damage Experiment at 300 K

PDB ID 4epe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4epe"
Personal tools