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| | ==Crystal structure of human Malonyl-CoA Decarboxylase (Peroxisomal Isoform)== | | ==Crystal structure of human Malonyl-CoA Decarboxylase (Peroxisomal Isoform)== |
| - | <StructureSection load='4f0x' size='340' side='right' caption='[[4f0x]], [[Resolution|resolution]] 3.29Å' scene=''> | + | <StructureSection load='4f0x' size='340' side='right'caption='[[4f0x]], [[Resolution|resolution]] 3.29Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4f0x]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F0X FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4f0x]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F0X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F0X FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0OR:N~3~-[(2R)-2-HYDROXY-4-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3,3-DIMETHYLBUTANOYL]-BETA-ALANINAMIDE'>0OR</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0OR:N~3~-[(2R)-2-HYDROXY-4-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3,3-DIMETHYLBUTANOYL]-BETA-ALANINAMIDE'>0OR</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DCYLM, MLYCD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f0x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0x OCA], [https://pdbe.org/4f0x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f0x RCSB], [https://www.ebi.ac.uk/pdbsum/4f0x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f0x ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malonyl-CoA_decarboxylase Malonyl-CoA decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.9 4.1.1.9] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f0x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f0x OCA], [http://pdbe.org/4f0x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4f0x RCSB], [http://www.ebi.ac.uk/pdbsum/4f0x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4f0x ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Disease == | | == Disease == |
| - | [[http://www.uniprot.org/uniprot/DCMC_HUMAN DCMC_HUMAN]] Malonic aciduria. Defects in MLYCD are the cause of malonyl-CoA decarboxylase deficiency (MLYCD deficiency) [MIM:[http://omim.org/entry/248360 248360]]. MLYCD deficiency is an autosomal recessive disease characterized by abdominal pain, chronic constipation, episodic vomiting, metabolic acidosis and malonic aciduria. | + | [https://www.uniprot.org/uniprot/DCMC_HUMAN DCMC_HUMAN] Malonic aciduria. Defects in MLYCD are the cause of malonyl-CoA decarboxylase deficiency (MLYCD deficiency) [MIM:[https://omim.org/entry/248360 248360]. MLYCD deficiency is an autosomal recessive disease characterized by abdominal pain, chronic constipation, episodic vomiting, metabolic acidosis and malonic aciduria. |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/DCMC_HUMAN DCMC_HUMAN]] Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. In peroxisomes it may be involved in degrading intraperoxisomal malonyl-CoA, which is generated by the peroxisomal beta-oxidation of odd chain-length dicarboxylic fatty acids. | + | [https://www.uniprot.org/uniprot/DCMC_HUMAN DCMC_HUMAN] Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. In peroxisomes it may be involved in degrading intraperoxisomal malonyl-CoA, which is generated by the peroxisomal beta-oxidation of odd chain-length dicarboxylic fatty acids. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| - | [[Category: Malonyl-CoA decarboxylase]] | + | [[Category: Large Structures]] |
| - | [[Category: Aparicio, D]] | + | [[Category: Aparicio D]] |
| - | [[Category: Fita, I]] | + | [[Category: Fita I]] |
| - | [[Category: Perez, R]] | + | [[Category: Perez R]] |
| - | [[Category: Enzyme]]
| + | |
| - | [[Category: Lyase]]
| + | |
| - | [[Category: Peroxisome]]
| + | |
| Structural highlights
Disease
DCMC_HUMAN Malonic aciduria. Defects in MLYCD are the cause of malonyl-CoA decarboxylase deficiency (MLYCD deficiency) [MIM:248360. MLYCD deficiency is an autosomal recessive disease characterized by abdominal pain, chronic constipation, episodic vomiting, metabolic acidosis and malonic aciduria.
Function
DCMC_HUMAN Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. In peroxisomes it may be involved in degrading intraperoxisomal malonyl-CoA, which is generated by the peroxisomal beta-oxidation of odd chain-length dicarboxylic fatty acids.
Publication Abstract from PubMed
Decarboxylation of malonyl-CoA to acetyl-CoA by Malonyl-CoA Decarboxylase (EC 4.1.1.9) is an essential facet in the regulation of fatty acid metabolism. The structure of human peroxisomal Malonyl-CoA Decarboxylase reveals a molecular tetramer that is best described as a dimer of structural heterodimers, in which the two subunits present markedly different conformations. This molecular organization is consistent with half-of-the-sites reactivity. Each subunit has an all-helix N-terminal domain and a catalytic C-terminal domain with a histone acetyltransferase fold (GNAT superfamily). Inter-subunit disulphide bridges, Cys206-Cys206 and Cys243-Cys243, can link the four subunits of the tetramer imparting positive cooperativity to the catalytic process. Combination of a half-of-the-sites mechanism within each structural heterodimer and positive cooperativity in the tetramer produces a complex regulatory picture that is further complicated by the multiple intracellular locations of the enzyme. Transport into the peroxisome has been investigated by docking human Malonyl-CoA Decarboxylase to the peroxisomal import protein Peroxin 5, which revealed interactions that extend beyond the C-terminal targeting motif.
Structural asymmetry and disulphide bridges among subunits modulate the activity of human Malonyl-CoA Decarboxylase.,Aparicio D, Perez R, Carpena X, Diaz M, Ferrer JC, Loewen PC, Fita I J Biol Chem. 2013 Mar 11. PMID:23482565[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Aparicio D, Perez R, Carpena X, Diaz M, Ferrer JC, Loewen PC, Fita I. Structural asymmetry and disulphide bridges among subunits modulate the activity of human Malonyl-CoA Decarboxylase. J Biol Chem. 2013 Mar 11. PMID:23482565 doi:http://dx.doi.org/10.1074/jbc.M112.443846
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