This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4fmd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==EspG-Rab1 complex structure at 3.05 A==
==EspG-Rab1 complex structure at 3.05 A==
-
<StructureSection load='4fmd' size='340' side='right' caption='[[4fmd]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
+
<StructureSection load='4fmd' size='340' side='right'caption='[[4fmd]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4fmd]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FMD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4fmd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FMD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4fma|4fma]], [[4fmb|4fmb]], [[4fmc|4fmc]], [[4fme|4fme]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fmd OCA], [https://pdbe.org/4fmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fmd RCSB], [https://www.ebi.ac.uk/pdbsum/4fmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fmd ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">espG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), RAB1, RAB1A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4fmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fmd OCA], [http://pdbe.org/4fmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4fmd RCSB], [http://www.ebi.ac.uk/pdbsum/4fmd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4fmd ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RAB1A_HUMAN RAB1A_HUMAN]] Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.
+
[https://www.uniprot.org/uniprot/Q7DB50_ECO57 Q7DB50_ECO57]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 18:
</div>
</div>
<div class="pdbe-citations 4fmd" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4fmd" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Shao, F]]
+
[[Category: Large Structures]]
-
[[Category: Zhu, Y]]
+
[[Category: Shao F]]
-
[[Category: Alpha-beta fold]]
+
[[Category: Zhu Y]]
-
[[Category: Protein binding]]
+
-
[[Category: Rab1]]
+
-
[[Category: Rab1-gap]]
+

Revision as of 19:58, 19 October 2022

EspG-Rab1 complex structure at 3.05 A

PDB ID 4fmd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools