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| | ==Crystal Structure Analysis of a GH30 Endoxylanase from Clostridium papyrosolvens C71== | | ==Crystal Structure Analysis of a GH30 Endoxylanase from Clostridium papyrosolvens C71== |
| - | <StructureSection load='4fmv' size='340' side='right' caption='[[4fmv]], [[Resolution|resolution]] 2.01Å' scene=''> | + | <StructureSection load='4fmv' size='340' side='right'caption='[[4fmv]], [[Resolution|resolution]] 2.01Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4fmv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_papyrosolvens_dsm_2782 Clostridium papyrosolvens dsm 2782]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FMV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FMV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4fmv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruminiclostridium_papyrosolvens_DSM_2782 Ruminiclostridium papyrosolvens DSM 2782]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FMV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FMV FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cpap_2855 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=588581 Clostridium papyrosolvens DSM 2782])</td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fmv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fmv OCA], [https://pdbe.org/4fmv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fmv RCSB], [https://www.ebi.ac.uk/pdbsum/4fmv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fmv ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucuronoarabinoxylan_endo-1,4-beta-xylanase Glucuronoarabinoxylan endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.136 3.2.1.136] </span></td></tr>
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4fmv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fmv OCA], [http://pdbe.org/4fmv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4fmv RCSB], [http://www.ebi.ac.uk/pdbsum/4fmv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4fmv ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/F1TBY8_9FIRM F1TBY8_9FIRM] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Clostridium papyrosolvens dsm 2782]] | + | [[Category: Large Structures]] |
| - | [[Category: Glucuronoarabinoxylan endo-1,4-beta-xylanase]] | + | [[Category: Ruminiclostridium papyrosolvens DSM 2782]] |
| - | [[Category: Bales, E B]] | + | [[Category: Bales EB]] |
| - | [[Category: Hurlbert, J C]] | + | [[Category: Hurlbert JC]] |
| - | [[Category: John, F J.St]]
| + | [[Category: Smith JK]] |
| - | [[Category: Smith, J K]] | + | [[Category: St John FJ]] |
| - | [[Category: Alpha beta barrel]] | + | |
| - | [[Category: Hydrolase]]
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| Structural highlights
Function
F1TBY8_9FIRM
Publication Abstract from PubMed
Endoxylanases classified into glycoside hydrolase family 30 subfamily 8 (GH30-8) are known to hydrolyze the hemicellulosic polysaccharide glucuronoxylan (GX) but not arabinoxylan or neutral xylooligosaccharides. This is owing to the specificity of these enzymes for the alpha-1,2-linked glucuronate (GA) appendage of GX. Limit hydrolysis of this substrate produces a series of aldouronates each containing a single GA substituted on the xylose penultimate to the reducing terminus. In this work, the structural and biochemical characterization of xylanase 30A from Clostridium papyrosolvens (CpXyn30A) is presented. This xylanase possesses a high degree of amino-acid identity to the canonical GH30-8 enzymes, but lacks the hallmark beta8-alpha8 loop region which in part defines the function of this GH30 subfamily and its role in GA recognition. CpXyn30A is shown to have a similarly low activity on all xylan substrates, while hydrolysis of xylohexaose revealed a competing transglycosylation reaction. These findings are directly compared with the model GH30-8 enzyme from Bacillus subtilis, XynC. Despite its high sequence identity to the GH30-8 enzymes, CpXyn30A does not have any apparent specificity for the GA appendage. These findings confirm that the typically conserved beta8-alpha8 loop region of these enzymes influences xylan substrate specificity but not necessarily beta-1,4-xylanase function.
A novel member of glycoside hydrolase family 30 subfamily 8 with altered substrate specificity.,St John FJ, Dietrich D, Crooks C, Pozharski E, Gonzalez JM, Bales E, Smith K, Hurlbert JC Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2950-8. doi:, 10.1107/S1399004714019531. Epub 2014 Oct 23. PMID:25372685[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ St John FJ, Dietrich D, Crooks C, Pozharski E, Gonzalez JM, Bales E, Smith K, Hurlbert JC. A novel member of glycoside hydrolase family 30 subfamily 8 with altered substrate specificity. Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2950-8. doi:, 10.1107/S1399004714019531. Epub 2014 Oct 23. PMID:25372685 doi:http://dx.doi.org/10.1107/S1399004714019531
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