This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1iq7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1iq7.jpg|left|200px]]
[[Image:1iq7.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1iq7 |SIZE=350|CAPTION= <scene name='initialview01'>1iq7</scene>, resolution 2.3&Aring;
+
The line below this paragraph, containing "STRUCTURE_1iq7", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1iq7| PDB=1iq7 | SCENE= }}
-
|RELATEDENTRY=[[1tfa|1TFA]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iq7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iq7 OCA], [http://www.ebi.ac.uk/pdbsum/1iq7 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1iq7 RCSB]</span>
+
-
}}
+
'''Ovotransferrin, C-Terminal Lobe, Apo Form'''
'''Ovotransferrin, C-Terminal Lobe, Apo Form'''
Line 31: Line 28:
[[Category: Tabata, S.]]
[[Category: Tabata, S.]]
[[Category: Yamashita, H.]]
[[Category: Yamashita, H.]]
-
[[Category: iron binding protein]]
+
[[Category: Iron binding protein]]
-
[[Category: ovotransferrin]]
+
[[Category: Ovotransferrin]]
-
[[Category: transferrin]]
+
[[Category: Transferrin]]
-
[[Category: transport protein]]
+
[[Category: Transport protein]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 20:16:33 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:23:10 2008''
+

Revision as of 17:16, 2 May 2008

Template:STRUCTURE 1iq7

Ovotransferrin, C-Terminal Lobe, Apo Form


Overview

The differential properties of anion-mediated Fe(3+) release between the N- and C-lobes of transferrins have been a focus in transferrin biochemistry. The structural and kinetic characteristics for isolated lobe have, however, been documented with the N-lobe only. Here we demonstrate for the first time the quantitative Fe(3+) release kinetics and the anion-binding structure for the isolated C-lobe of ovotransferrin. In the presence of pyrophosphate, sulfate, and nitrilotriacetate anions, the C-lobe released Fe(3+) with a decelerated rate in a single exponential progress curve, and the observed first order rate constants displayed a hyperbolic profile as a function of the anion concentration. The profile was consistent with a newly derived single-pathway Fe(3+) release model in which the holo form is converted depending on the anion concentration into a "mixed ligand" intermediate that releases Fe(3+). The apo C-lobe was crystallized in ammonium sulfate solution, and the structure determined at 2.3 A resolution demonstrated the existence of a single bound SO(4)(2-) in the interdomain cleft, which interacts directly with Thr(461)-OG1, Tyr(431)-OH, and His(592)-NE2 and indirectly with Tyr(524)-OH. The latter three groups are Fe(3+)-coordinating ligands, strongly suggesting the facilitated Fe(3+) release upon the anion occupation at this site. The SO(4)(2-) binding structure supported the single-pathway kinetic model.

About this Structure

1IQ7 is a Single protein structure of sequence from Gallus gallus. Full crystallographic information is available from OCA.

Reference

Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway., Mizutani K, Muralidhara BK, Yamashita H, Tabata S, Mikami B, Hirose M, J Biol Chem. 2001 Sep 21;276(38):35940-6. Epub 2001 Jul 20. PMID:11466309 Page seeded by OCA on Fri May 2 20:16:33 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools