4g3m

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==Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis==
==Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis==
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<StructureSection load='4g3m' size='340' side='right' caption='[[4g3m]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
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<StructureSection load='4g3m' size='340' side='right'caption='[[4g3m]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4g3m]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G3M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G3M FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4g3m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G3M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G3M FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AI9:[(2R,3S,4S,5E)-5-[[5-AZANYL-2,4-BIS(OXIDANYLIDENE)-1H-PYRIMIDIN-6-YL]IMINO]-2,3,4-TRIS(OXIDANYL)PENTYL]+DIHYDROGEN+PHOSPHATE'>AI9</scene>, <scene name='pdbligand=AOF:N-(5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL)-5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE'>AOF</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AI9:[(2R,3S,4S,5E)-5-[[5-AZANYL-2,4-BIS(OXIDANYLIDENE)-1H-PYRIMIDIN-6-YL]IMINO]-2,3,4-TRIS(OXIDANYL)PENTYL]+DIHYDROGEN+PHOSPHATE'>AI9</scene>, <scene name='pdbligand=AOF:N-(5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL)-5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE'>AOF</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2b3z|2b3z]], [[3ex8|3ex8]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g3m OCA], [https://pdbe.org/4g3m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g3m RCSB], [https://www.ebi.ac.uk/pdbsum/4g3m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g3m ProSAT]</span></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU23280, ribD, ribG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g3m OCA], [http://pdbe.org/4g3m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4g3m RCSB], [http://www.ebi.ac.uk/pdbsum/4g3m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4g3m ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RIBD_BACSU RIBD_BACSU]] Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
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[https://www.uniprot.org/uniprot/RIBD_BACSU RIBD_BACSU] Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacsu]]
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[[Category: Bacillus subtilis subsp. subtilis str. 168]]
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[[Category: Chang, T H]]
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[[Category: Large Structures]]
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[[Category: Chen, S C]]
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[[Category: Chang TH]]
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[[Category: Lai, W L]]
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[[Category: Chen SC]]
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[[Category: Liaw, S H]]
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[[Category: Lai WL]]
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[[Category: Shen, C Y]]
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[[Category: Liaw SH]]
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[[Category: Yen, T M]]
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[[Category: Shen CY]]
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[[Category: Yu, H C]]
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[[Category: Yen TM]]
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[[Category: Alpha/beta/alpha]]
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[[Category: Yu HC]]
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[[Category: Deaminase domain]]
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[[Category: Hydrolase]]
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[[Category: Oxidoreductase]]
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[[Category: Reductase domain]]
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Revision as of 20:23, 19 October 2022

Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis

PDB ID 4g3m

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