We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

4gfi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of EFI-502318, an enolase family member from Agrobacterium tumefaciens with homology to dipeptide epimerases (bound sodium, L-Ala-L-Glu with ordered loop)==
==Crystal structure of EFI-502318, an enolase family member from Agrobacterium tumefaciens with homology to dipeptide epimerases (bound sodium, L-Ala-L-Glu with ordered loop)==
-
<StructureSection load='4gfi' size='340' side='right' caption='[[4gfi]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='4gfi' size='340' side='right'caption='[[4gfi]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4gfi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GFI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4gfi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GFI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Atu1648 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gfi OCA], [https://pdbe.org/4gfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gfi RCSB], [https://www.ebi.ac.uk/pdbsum/4gfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gfi ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gfi OCA], [http://pdbe.org/4gfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4gfi RCSB], [http://www.ebi.ac.uk/pdbsum/4gfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4gfi ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A9CIT6_AGRFC A9CIT6_AGRFC]
==See Also==
==See Also==
*[[Mandelate racemase|Mandelate racemase]]
*[[Mandelate racemase|Mandelate racemase]]
 +
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Agrt5]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Bouvier, J T]]
+
[[Category: Almo SC]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Bouvier JT]]
-
[[Category: Gerlt, J A]]
+
[[Category: Gerlt JA]]
-
[[Category: Imker, H J]]
+
[[Category: Imker HJ]]
-
[[Category: Morisco, L L]]
+
[[Category: Morisco LL]]
-
[[Category: Sojitra, S]]
+
[[Category: Sojitra S]]
-
[[Category: Vetting, M W]]
+
[[Category: Vetting MW]]
-
[[Category: Wasserman, S R]]
+
[[Category: Wasserman SR]]
-
[[Category: Efi]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Putative l-ala-l/d-glu epimerase]]
+
-
[[Category: Structural genomic]]
+

Revision as of 06:54, 26 October 2022

Crystal structure of EFI-502318, an enolase family member from Agrobacterium tumefaciens with homology to dipeptide epimerases (bound sodium, L-Ala-L-Glu with ordered loop)

PDB ID 4gfi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools