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| ==The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5== | | ==The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5== |
- | <StructureSection load='4how' size='340' side='right' caption='[[4how]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='4how' size='340' side='right'caption='[[4how]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4how]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aplanobacter_rhaponticum"_(sic)_(millard_1924)_white_1936 "aplanobacter rhaponticum" (sic) (millard 1924) white 1936]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HOW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HOW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4how]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_rhapontici Erwinia rhapontici]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HOW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HOW FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hox|4hox]], [[4hoz|4hoz]], [[4hp5|4hp5]], [[4hph|4hph]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4how FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4how OCA], [https://pdbe.org/4how PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4how RCSB], [https://www.ebi.ac.uk/pdbsum/4how PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4how ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PalI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=55212 "Aplanobacter rhaponticum" (sic) (Millard 1924) White 1936])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isomaltulose_synthase Isomaltulose synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.11 5.4.99.11] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4how FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4how OCA], [http://pdbe.org/4how PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4how RCSB], [http://www.ebi.ac.uk/pdbsum/4how PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4how ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/D9MPF2_ERWRD D9MPF2_ERWRD] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 4how" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4how" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Trehalulose synthase|Trehalulose synthase]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Isomaltulose synthase]] | + | [[Category: Erwinia rhapontici]] |
- | [[Category: Li, S]] | + | [[Category: Large Structures]] |
- | [[Category: Xu, H]] | + | [[Category: Li S]] |
- | [[Category: Xu, Z]] | + | [[Category: Xu H]] |
- | [[Category: Zhou, J]] | + | [[Category: Xu Z]] |
- | [[Category: Calcium binding]]
| + | [[Category: Zhou J]] |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Isomerase]]
| + | |
- | [[Category: Tim barrel]]
| + | |
| Structural highlights
Function
D9MPF2_ERWRD
Publication Abstract from PubMed
Sucrose isomerase NX-5 from Erwiniarhapontici efficiently catalyzes the isomerization of sucrose to isomaltulose (main product) and trehalulose (by-product). To investigate the molecular mechanism controlling sucrose isomer formation, we determined the crystal structures of native NX-5 and its mutant complexes E295Q/sucrose and D241A/glucose at 1.70 A, 1.70 A and 2.00 A, respectively. The overall structure and active site architecture of NX-5 resemble those of other reported sucrose isomerases. Strikingly, the substrate binding mode of NX-5 is also similar to that of trehalulose synthase from Pseudomonasmesoacidophila MX-45 (MutB). Detailed structural analysis revealed the catalytic RXDRX motif and the adjacent 10-residue loop of NX-5 and isomaltulose synthase PalI from Klebsiella sp. LX3 adopt a distinct orientation from those of trehalulose synthases. Mutations of the loop region of NX-5 resulted in significant changes of the product ratio between isomaltulose and trehalulose. The molecular dynamics simulation data supported the product specificity of NX-5 towards isomaltulose and the role of the loop(330-339) in NX-5 catalysis. This work should prove useful for the engineering of sucrose isomerase for industrial carbohydrate biotransformations.
The Structural Basis of Erwinia rhapontici Isomaltulose Synthase.,Xu Z, Li S, Li J, Li Y, Feng X, Wang R, Xu H, Zhou J PLoS One. 2013 Sep 19;8(9):e74788. doi: 10.1371/journal.pone.0074788. PMID:24069347[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Xu Z, Li S, Li J, Li Y, Feng X, Wang R, Xu H, Zhou J. The Structural Basis of Erwinia rhapontici Isomaltulose Synthase. PLoS One. 2013 Sep 19;8(9):e74788. doi: 10.1371/journal.pone.0074788. PMID:24069347 doi:http://dx.doi.org/10.1371/journal.pone.0074788
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