User:Karsten Theis/Showcase
From Proteopedia
(Difference between revisions)
(New page: == Proteopedia and Biomolecular Visualization == * access: just a browser, registered users can create pages, remix * unique combination of 3D figures, captions, and explanatory text * in...) |
|||
| Line 9: | Line 9: | ||
<StructureSection load='3rec' size='350' side='right' caption='Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])' scene=''> | <StructureSection load='3rec' size='350' side='right' caption='Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])' scene=''> | ||
| - | == Access == | + | === Access === |
| - | I made this page today. There are public pages (wiki), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; background white; hide water or ligand</script><text>lysozyme</text></jmolLink> </jmol>. All of the figures are remixed from existing pages. | + | I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; background white; hide water or ligand</script><text>lysozyme</text></jmolLink> </jmol>. All of the figures are remixed from existing pages. |
=== Interactivity === | === Interactivity === | ||
You can provide buttons to change the representation and highlight features. | You can provide buttons to change the representation and highlight features. | ||
| - | |||
<jmol> | <jmol> | ||
| Line 62: | Line 61: | ||
<jmol><jmolLink><script>if ({water and visible}.size>0) {select water; spacefill off} else {select water; spacefill 1.0} </script><text>[± water]</text></jmolLink> </jmol> | <jmol><jmolLink><script>if ({water and visible}.size>0) {select water; spacefill off} else {select water; spacefill 1.0} </script><text>[± water]</text></jmolLink> </jmol> | ||
| + | === Innovation === | ||
| + | |||
| + | Large structures (Eric Martz via FGIJ) | ||
| + | |||
| + | Visualizing contacts (Bob Hanson) | ||
| + | |||
| + | Morphs (Karsten) | ||
| + | [[Image:Serpin-movie.gif]] | ||
| + | |||
| + | Saved animations (Proteopedia team) | ||
| + | [[Image:Alpha helix.gif]] | ||
| + | [[Image:1hewB.gif]] | ||
| + | [[Image:Insulin.gif]] | ||
| + | [[Image:TRNA.gif]] | ||
| + | [[Image:Salbutamol.gif]] | ||
</StructureSection> | </StructureSection> | ||
Revision as of 15:45, 8 November 2022
Proteopedia and Biomolecular Visualization
- access: just a browser, registered users can create pages, remix
- unique combination of 3D figures, captions, and explanatory text
- innovation in visualization: Eric Martz, Bob Hanson, Weizman Institute team
- multi-language, multi-cultural, international
| |||||||||||
