7zrl

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Current revision (20:11, 16 November 2022) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 7zrl is ON HOLD
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==Cryo-EM map of the unphosphorylated KdpFABC complex in the E2-P conformation, under turnover conditions==
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<StructureSection load='7zrl' size='340' side='right'caption='[[7zrl]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7zrl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZRL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZRL FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PHD:ASPARTYL+PHOSPHATE'>PHD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zrl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zrl OCA], [https://pdbe.org/7zrl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zrl RCSB], [https://www.ebi.ac.uk/pdbsum/7zrl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zrl ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KDPA_ECOLI KDPA_ECOLI] Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm (PubMed:2849541, PubMed:8499455, PubMed:23930894). This subunit binds and transports the potassium across the cytoplasmic membrane (PubMed:7896809).<ref>PMID:23930894</ref> <ref>PMID:2849541</ref> <ref>PMID:7896809</ref> <ref>PMID:8499455</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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KdpFABC is a high-affinity prokaryotic K&lt;sup&gt;+&lt;/sup&gt; uptake system that forms a functional chimera between a channel-like subunit (KdpA) and a P-type ATPase (KdpB). At high K&lt;sup&gt;+&lt;/sup&gt; levels, KdpFABC needs to be inhibited to prevent excessive K&lt;sup&gt;+&lt;/sup&gt; accumulation to the point of toxicity. This is achieved by a phosphorylation of the serine residue in the TGES&lt;sub&gt;162&lt;/sub&gt; motif in the A domain of the pump subunit KdpB (KdpB&lt;sub&gt;S162-P&lt;/sub&gt;). Here, we explore the structural basis of inhibition by KdpB&lt;sub&gt;S162&lt;/sub&gt; phosphorylation by determining the conformational landscape of KdpFABC under inhibiting and non-inhibiting conditions. Under turnover conditions, we identified a new inhibited KdpFABC state that we termed E1P tight, which is not part of the canonical Post-Albers transport cycle of P-type ATPases. It likely represents the biochemically described stalled E1P state adopted by KdpFABC upon KdpB&lt;sub&gt;S162&lt;/sub&gt; phosphorylation. The E1P tight state exhibits a compact fold of the three cytoplasmic domains and is likely adopted when the transition from high-energy E1P states to E2P states is unsuccessful. This study represents a structural characterization of a biologically relevant off-cycle state in the P-type ATPase family and supports the emerging discussion of P-type ATPase regulation by such states.
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Authors:
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Inhibited KdpFABC transitions into an E1 off-cycle state.,Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hanelt I, Paulino C Elife. 2022 Oct 18;11. pii: 80988. doi: 10.7554/eLife.80988. PMID:36255052<ref>PMID:36255052</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 7zrl" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli K-12]]
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[[Category: Large Structures]]
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[[Category: Corey RA]]
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[[Category: Dubach VRA]]
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[[Category: Haenelt I]]
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[[Category: Hielkema L]]
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[[Category: Paulino C]]
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[[Category: Silberberg JM]]
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[[Category: Stansfeld PJ]]
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[[Category: Stock C]]
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[[Category: Wunnicke D]]

Current revision

Cryo-EM map of the unphosphorylated KdpFABC complex in the E2-P conformation, under turnover conditions

PDB ID 7zrl

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