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| | ==Crystal Structure of Mtb FadD10 in Complex with Dodecanoyl-AMP== | | ==Crystal Structure of Mtb FadD10 in Complex with Dodecanoyl-AMP== |
| - | <StructureSection load='4ir7' size='340' side='right' caption='[[4ir7]], [[Resolution|resolution]] 2.80Å' scene=''> | + | <StructureSection load='4ir7' size='340' side='right'caption='[[4ir7]], [[Resolution|resolution]] 2.80Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4ir7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IR7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IR7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4ir7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IR7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IR7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1ZZ:5-O-[(S)-(DODECANOYLOXY)(HYDROXY)PHOSPHORYL]ADENOSINE'>1ZZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1ZZ:5-O-[(S)-(DODECANOYLOXY)(HYDROXY)PHOSPHORYL]ADENOSINE'>1ZZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rv0099 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ir7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ir7 OCA], [https://pdbe.org/4ir7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ir7 RCSB], [https://www.ebi.ac.uk/pdbsum/4ir7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ir7 ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Fatty-acyl-CoA_synthase Fatty-acyl-CoA synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.86 2.3.1.86] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ir7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ir7 OCA], [http://pdbe.org/4ir7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ir7 RCSB], [http://www.ebi.ac.uk/pdbsum/4ir7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ir7 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Fatty-acyl-CoA synthase]] | + | [[Category: Large Structures]] |
| - | [[Category: Myctu]] | + | [[Category: Mycobacterium tuberculosis H37Rv]] |
| - | [[Category: Liu, Z]] | + | [[Category: Liu Z]] |
| - | [[Category: Sacchettini, J C]] | + | [[Category: Sacchettini JC]] |
| - | [[Category: Structural genomic]]
| + | [[Category: Wang F]] |
| - | [[Category: Wang, F]] | + | |
| - | [[Category: Open conformation]]
| + | |
| - | [[Category: Tbsgc]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Mycobacterium tuberculosis has a group of 34 FadD proteins that belong to the adenylate-forming superfamily. They are classified as either fatty acyl-AMP ligases (FAALs) or fatty acyl-CoA ligases (FACLs) based on sequence analysis. FadD10, involved in the synthesis of a virulence-related lipopeptide, was mis-annotated as a FACL, however, it is in fact a FAAL that transfers fatty acids to an acyl carrier protein (Rv0100). In this study, we have determined the structures of FadD10 in both the apo and the complexed form with dodecanoyl-AMP, where we see for the first time an adenylate-forming enzyme that does not adopt a closed conformation for catalysis. Indeed, this novel conformation of FadD10, facilitated by its unique inter-domain and intermolecular interactions, is critical for the enzyme to carry out the acyl transfer onto Rv0100 rather than Coenzyme A. This contradicts the existing model of FAALs that rely on an insertion motif for the acyl transferase specificity, and thus makes FadD10 a new type of FAAL. We have also characterized the fatty acid preference of FadD10 through biological and structural analyses, and the data indicate long chain saturated fatty acids as the biological substrates of the enzyme.
Structures of Mtb FadD10 reveal a new type of Adenylate-forming enzyme.,Liu Z, Ioerger TR, Wang F, Sacchettini JC J Biol Chem. 2013 Apr 26. PMID:23625916[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Liu Z, Ioerger TR, Wang F, Sacchettini JC. Structures of Mtb FadD10 reveal a new type of Adenylate-forming enzyme. J Biol Chem. 2013 Apr 26. PMID:23625916 doi:http://dx.doi.org/10.1074/jbc.M113.466912
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