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| | ==X-ray structure of the CARD domain of zebrafish GBP-NLRP1 like protein== | | ==X-ray structure of the CARD domain of zebrafish GBP-NLRP1 like protein== |
| - | <StructureSection load='4irl' size='340' side='right' caption='[[4irl]], [[Resolution|resolution]] 1.47Å' scene=''> | + | <StructureSection load='4irl' size='340' side='right'caption='[[4irl]], [[Resolution|resolution]] 1.47Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4irl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IRL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IRL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4irl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IRL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IRL FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PRD_900010:alpha-maltotetraose'>PRD_900010</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vd8|3vd8]], [[4ifp|4ifp]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4irl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4irl OCA], [https://pdbe.org/4irl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4irl RCSB], [https://www.ebi.ac.uk/pdbsum/4irl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4irl ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b4034, GBP-NLRP1, JW3994, malE, CH211-195H23.5-001, gbp3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4irl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4irl OCA], [http://pdbe.org/4irl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4irl RCSB], [http://www.ebi.ac.uk/pdbsum/4irl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4irl ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides. | + | [https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[https://www.uniprot.org/uniprot/B0V1H4_DANRE B0V1H4_DANRE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Brachidanio rerio]] | + | [[Category: Danio rerio]] |
| - | [[Category: Huang, M]] | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Jin, T]] | + | [[Category: Large Structures]] |
| - | [[Category: Smith, P]] | + | [[Category: Huang M]] |
| - | [[Category: Xiao, T]] | + | [[Category: Jin T]] |
| - | [[Category: Apoptosis]] | + | [[Category: Smith P]] |
| - | [[Category: Card]] | + | [[Category: Xiao T]] |
| - | [[Category: Death fold superfamily]]
| + | |
| - | [[Category: Inflammasome]]
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| - | [[Category: Innate immune system]]
| + | |
| - | [[Category: Signal transduction]]
| + | |
| - | [[Category: Six-helix bundle]]
| + | |
| Structural highlights
4irl is a 3 chain structure with sequence from Danio rerio and Escherichia coli K-12. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Ligands: | , , , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
MALE_ECOLI Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.B0V1H4_DANRE
Publication Abstract from PubMed
The caspase-recruitment domain (CARD) mediates homotypic protein-protein interactions that assemble large oligomeric signaling complexes such as the inflammasomes during innate immune responses. Structural studies of the mammalian CARDs demonstrate that their six-helix bundle folds belong to the death-domain superfamily, whereas such studies have not been reported for other organisms. Here, the zebrafish interferon-induced guanylate-binding protein 1 (zIGBP1) was identified that contains an N-terminal GTPase domain and a helical domain typical of the mammalian guanylate-binding proteins, followed by a FIIND domain and a C-terminal CARD similar to the mammalian inflammasome proteins NLRP1 and CARD8. The structure of the zIGBP1 CARD as a fusion with maltose-binding protein was determined at 1.47 A resolution. This revealed a six-helix bundle fold similar to the NLRP1 CARD structure with the bent alpha1 helix typical of all known CARD structures. The zIGBP1 CARD surface contains a positively charged patch near its alpha1 and alpha4 helices and a negatively charged patch near its alpha2, alpha3 and alpha5 helices, which may mediate its interaction with partner domains. Further studies using binding assays and other analyses will be required in order to address the physiological function(s) of this zebrafish protein.
Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein.,Jin T, Huang M, Smith P, Jiang J, Xiao TS Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):855-60. doi: , 10.1107/S1744309113015558. Epub 2013 Jul 27. PMID:23908027[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Jin T, Huang M, Smith P, Jiang J, Xiao TS. Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):855-60. doi: , 10.1107/S1744309113015558. Epub 2013 Jul 27. PMID:23908027 doi:10.1107/S1744309113015558
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