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| | ==Crystal structure of iron soaked (4h) ferritin from Pseudo-nitzschia multiseries== | | ==Crystal structure of iron soaked (4h) ferritin from Pseudo-nitzschia multiseries== |
| - | <StructureSection load='4isp' size='340' side='right' caption='[[4isp]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='4isp' size='340' side='right'caption='[[4isp]], [[Resolution|resolution]] 2.20Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4isp]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitzschia_pungens_f._multiseries Nitzschia pungens f. multiseries]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ISP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ISP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4isp]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudo-nitzschia_multiseries Pseudo-nitzschia multiseries]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ISP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ISP FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=YCM:S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE'>YCM</scene></td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=YCM:S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE'>YCM</scene></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4isp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4isp OCA], [https://pdbe.org/4isp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4isp RCSB], [https://www.ebi.ac.uk/pdbsum/4isp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4isp ProSAT]</span></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ism|4ism]], [[4itt|4itt]], [[4itw|4itw]], [[4iwj|4iwj]], [[4iwk|4iwk]], [[4ixk|4ixk]]</td></tr>
| + | |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FTN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37319 Nitzschia pungens f. multiseries])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4isp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4isp OCA], [http://pdbe.org/4isp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4isp RCSB], [http://www.ebi.ac.uk/pdbsum/4isp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4isp ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/B6DMH6_PSEMU B6DMH6_PSEMU] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 4isp" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4isp" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Ferritin 3D structures|Ferritin 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Nitzschia pungens f. multiseries]] | + | [[Category: Large Structures]] |
| - | [[Category: Murphy, M E.P]] | + | [[Category: Pseudo-nitzschia multiseries]] |
| - | [[Category: Pfaffen, S]] | + | [[Category: Murphy MEP]] |
| - | [[Category: Helix bundle]] | + | [[Category: Pfaffen S]] |
| - | [[Category: Cysteine alkylation]]
| + | |
| - | [[Category: Ferritin]]
| + | |
| - | [[Category: Iron storage]]
| + | |
| - | [[Category: Transport protein]]
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| Structural highlights
Function
B6DMH6_PSEMU Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]
Publication Abstract from PubMed
A novel ferritin was recently found in Pseudo-nitzschia multiseries (PmFTN), a marine pennate diatom that plays a major role in global primary production and carbon sequestration into the deep ocean. Crystals of recombinant PmFTN were soaked in iron and zinc solutions, and the structures were solved to 1.65-2.2-A resolution. Three distinct iron binding sites were identified as determined from anomalous dispersion data from aerobically grown ferrous soaked crystals. Sites A and B comprise the conserved ferroxidase active site, and site C forms a pathway leading toward the central cavity where iron storage occurs. In contrast, crystal structures derived from anaerobically grown and ferrous soaked crystals revealed only one ferrous iron in the active site occupying site A. In the presence of dioxygen, zinc is observed bound to all three sites. Iron oxidation experiments using stopped-flow absorbance spectroscopy revealed an extremely rapid phase corresponding to Fe(II) oxidation at the ferroxidase site, which is saturated after adding 48 ferrous iron to apo-PmFTN (two ferrous iron per subunit), and a much slower phase due to iron core formation. These results suggest an ordered stepwise binding of ferrous iron and dioxygen to the ferroxidase site in preparation for catalysis and a partial mobilization of iron from the site following oxidation.
Mechanism of ferrous iron binding and oxidation by ferritin from a pennate diatom.,Pfaffen S, Abdulqadir R, Le Brun NE, Murphy ME J Biol Chem. 2013 May 24;288(21):14917-25. doi: 10.1074/jbc.M113.454496. Epub, 2013 Apr 2. PMID:23548912[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Pfaffen S, Abdulqadir R, Le Brun NE, Murphy ME. Mechanism of ferrous iron binding and oxidation by ferritin from a pennate diatom. J Biol Chem. 2013 May 24;288(21):14917-25. doi: 10.1074/jbc.M113.454496. Epub, 2013 Apr 2. PMID:23548912 doi:10.1074/jbc.M113.454496
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